Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq3865 547 2e-151 >seq3865 Length=1303 Score = 547 bits (606), Expect = 2e-151 Identities = 710/972 (73%), Gaps = 8/972 (1%) Strand=Plus/Plus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||| | ||||| || | |||||| | || | || |||||||| | | |||||||| Sbjct 289 TGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATCATGATTCCT 348 Query 28702 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 || | | |||| || ||||| ||||| || || ||| |||| || || |||||||| Sbjct 349 TGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCCTCCAGTTGA 407 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 ||| || || ||||| ||||| || |||| | | | || || ||||||||||| || Sbjct 408 CATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAACATCATTTC 467 Query 28821 GGGAGCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGC 28880 || || || | || | || || || || |||||||||||||| | |||||||| Sbjct 468 TGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGC 527 Query 28881 TAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTT 28940 | || | || || ||| | |||||||| || || | |||| | | || | |||||| Sbjct 528 TGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTTTGCCACTT 587 Query 28941 CCTCATTGGCGTCTATGCT--TACATGGGACGCGAGTGGGAACTTAGCTAT-CGACTAGG 28997 || ||| | || | |||| |||||||| || || |||||| ||| || | || |||| Sbjct 588 -CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAA-TTATCTTTCCGTTTAGG 644 Query 28998 AATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTT 29057 ||| | || ||||| ||| || ||||| || || || ||||| || |||| ||||| Sbjct 645 TATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCAGTTTT 704 Query 29058 CCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGG 29117 | | ||||||| ||||||||||||| || |||| |||||||| |||||||| || Sbjct 705 CTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTATTTCTGG 764 Query 29118 CACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCA 29177 || ||||||| |||| | || |||||||| ||||| ||||| || |||||||| ||||| Sbjct 765 TACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCCATTCCA 824 Query 29178 CATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCT 29237 |||| | || |||||||| || || ||||| || |||| ||||||||||||||| | Sbjct 825 CATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGGTTCTTT 884 Query 29238 TGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAA 29297 || || || || | | ||||| || |||||| || || ||| ||||||| Sbjct 885 AGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGGTTACCG 944 Query 29298 GTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTT 29357 || || ||||| ||||| || || ||||||||||| ||||||||||||||||| ||||| Sbjct 945 TTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGGTCGTTT 1004 Query 29358 GATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTG 29417 || |||||||| ||||| ||||| || ||||| ||||||||||| | ||||| || Sbjct 1005 AATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTG 1064 Query 29418 GCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAA 29477 ||| || | || || |||||| |||| || || | || || ||||| || || || || Sbjct 1065 GCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCAACCTTAA 1124 Query 29478 CGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGC 29537 |||||| ||||| ||||| || || | ||| | |||||||| | || |||||||| Sbjct 1125 CGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACACTTGGGC 1184 Query 29538 TGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAA 29597 ||| | |||| || |||||| | || | ||||||||||| || ||||| || || || Sbjct 1185 TGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAA 1244 Query 29598 CTTCCCACTTGA 29609 |||||| || || Sbjct 1245 CTTCCCTCTAGA 1256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146658455735292