Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq3865 549 5e-152 >seq3865 Length=1303 Score = 549 bits (608), Expect = 5e-152 Identities = 723/991 (73%), Gaps = 12/991 (1%) Strand=Plus/Plus Query 18723 TTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACT 18782 ||| ||||| ||| | || ||| || |||||| | || ||||| |||||||| | | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 18783 GATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 |||||||| || | | |||| || || ||| ||||| || || ||| |||| || | Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAA 18899 |||| || ||||| || || ||||| || || ||| | || |||| |||| || || Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGT--TCTTTATTATACGGTAA 455 Query 18900 CAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCC 18959 ||||||||| || || || || | || | || || || || ||||||||||||| Sbjct 456 CAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCC 515 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 | | ||||||||| || | || || ||| | |||||||| || || | |||| | | Sbjct 516 AGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAAT 575 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCT--TACATGGGACGCGAGTGGGAACTTAGC 19077 || | |||||| || ||| | || | |||| |||||||| || || |||||| ||| | Sbjct 576 CGTTTGCCACTT-CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAA-TTATC 632 Query 19078 TAT-CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGC 19136 | | || |||| ||||| || ||||| ||| || ||||| || || ||||| || || Sbjct 633 TTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGC 692 Query 19137 CTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTT 19196 |||| || ||| | |||| || | ||||||||||| || |||| ||||||||| Sbjct 693 TACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTT 752 Query 19197 GGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCAT 19256 |||||| |||||| ||||||| |||| | |||||||| |||||||| |||||||| || Sbjct 753 AGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTAT 812 Query 19257 GCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGAT 19316 |||||| ||||||||| | ||||| |||||||| || || || || |||| ||| || Sbjct 813 GCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAAT 872 Query 19317 GCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAA 19376 ||||||||| | ||||| || || | | |||||||| |||||| | | ||| || Sbjct 873 GCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAA 932 Query 19377 CTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTA 19436 | ||| ||| || || ||||| ||||| || || ||||| || |||||||| || || Sbjct 933 CGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTA 992 Query 19437 TTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTT 19496 |||||||| | |||||||| ||||| || |||||||| ||||| |||| ||||| Sbjct 993 CTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTT 1052 Query 19497 TTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGC 19556 || |||||||||||||| | || || ||||| | || | || || || ||||| Sbjct 1053 CTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGC 1112 Query 19557 ATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCAT 19616 |||||| | || || || ||||| ||||| || || ||||| | |||||||| | Sbjct 1113 TTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATT 1172 Query 19617 TGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACG 19676 | |||||||||||||| |||| ||||||||| | || | || |||||||||||||| Sbjct 1173 AAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACG 1232 Query 19677 TAATGCTCATAACTTCCCACTTGATTTGGCT 19707 ||| || || |||||||| || || || ||| Sbjct 1233 TAACGCGCACAACTTCCCTCTAGACTTAGCT 1263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141141924465516