Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq879 86.0 6e-12 seq12 86.0 6e-12 >seq879 Length=48288 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| |||| || | | ||||| || |||||||||||||| || ||| Sbjct 4028 CGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTG 3969 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 3968 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCC 3909 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || || | | || | || || | | ||| || || | Sbjct 3908 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGA 3849 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||| |||||||| || || | ||| ||||||||| Sbjct 3848 GTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 >seq12 Length=425388 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | ||||| || || |||||||| || || || Sbjct 401076 CGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTG 401135 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| || ||||| || |||| | |||| || ||||| || ||||| || ||||| Sbjct 401136 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCC 401195 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || || || | | || | || || | || ||| || || | | Sbjct 401196 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGC 401255 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || |||||||| || || | ||||||||||||| Sbjct 401256 GTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476586761760720