Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq12 141 8e-29 seq879 138 1e-27 >seq12 Length=425388 Score = 141 bits (156), Expect = 8e-29 Identities = 183/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | ||| |||||| || ||||||||||| ||| Sbjct 401070 CCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 401129 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| ||||||||||| | ||| Sbjct 401130 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGA 401189 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||||| | |||| | | ||||| ||| || || Sbjct 401190 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCGAC 401248 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG-TGCGCAC 35747 ||| | |||||| || || || |||| || || || || |||||||| | | ||||| Sbjct 401249 CTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATGCCGCCGCGCAG 401308 Query 35748 ACACACCAC 35756 || || ||| Sbjct 401309 ACGCAGCAC 401317 Score = 129 bits (142), Expect = 5e-25 Identities = 172/235 (73%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | ||| |||||| || |||||||| || |||| || || | || Sbjct 401780 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATC 401839 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| |||||||| || | ||||||||||| | || | | ||||||||| Sbjct 401840 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 401899 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | |||||| ||||| | |||| | | ||||| ||| || ||||| | |||||| | Sbjct 401900 CTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGG 401958 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG-TGCGCACACACACCAC 35756 | || || |||| || || ||||| |||||||| | | ||||| || || ||| Sbjct 401959 TCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGCCGCCGCGCAGACGCAGCAC 402013 Score = 125 bits (138), Expect = 6e-24 Identities = 171/235 (73%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | ||| |||||| || |||||||| || |||| || || | || Sbjct 400400 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 400459 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| |||||||| || | ||||||||||| | || | | ||||||||| Sbjct 400460 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 400519 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | |||||| ||||| | |||| | | ||||| ||| || ||||| | ||||| | Sbjct 400520 CTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGG 400578 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG-TGCGCACACACACCAC 35756 | || || |||| || || ||||| |||||||| | | ||||| || || ||| Sbjct 400579 TCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATGCCGCCGCGCAGACGCAGCAC 400633 Score = 120 bits (132), Expect = 3e-22 Identities = 170/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | ||| |||||| || |||||||| || |||| || || | || Sbjct 400628 CAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 400687 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| |||||||| || | ||||||||||| | || | | ||||||||| Sbjct 400688 CTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 400747 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | |||||| ||||| | |||| | | ||||| ||| || ||||| | ||||| | Sbjct 400748 CTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGG 400806 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG-TGCGCACACACACCAC 35756 | || || |||| || || || || |||||||| | | ||||| || || ||| Sbjct 400807 TCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATGCCGCCGCGCAGACGCAGCAC 400861 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | |||| |||||| || |||||||| || |||| || || | || Sbjct 400856 CAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATC 400915 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| || | ||||||||||| | || | | ||||||||| Sbjct 400916 CTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 400975 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 |||||| ||||| | |||| | | ||||| ||| || ||||| | ||||| | Sbjct 400976 TTGGATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGG 401034 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || |||| || || ||||| |||||||| Sbjct 401035 TCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 >seq879 Length=48288 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| |||||| Sbjct 2734 CCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2675 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| ||||||||||||| ||| Sbjct 2674 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGA 2615 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||||| | |||| | | ||||| || || || Sbjct 2614 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAAC 2556 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || || |||| || |||||||| |||||||| Sbjct 2555 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| || | |||| |||||| ||||||||||| || |||| ||| || | || Sbjct 4020 CAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCCATC 3961 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || || || || | ||||||||||||| |||| || ||||||||| Sbjct 3960 CTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 3901 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | |||||| ||||| | |||| | | ||||| || || ||||| | ||||| | Sbjct 3900 CTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGATGG 3842 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || |||| || || || || |||||||| Sbjct 3841 TTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | |||| |||||| || |||||||| || ||| Sbjct 3806 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3747 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| || | || ||||||||||| |||||||| |||| ||||||||||||| Sbjct 3746 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCG 3692 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| || |||||||| || ||| Sbjct 3276 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3217 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 | ||| || | || ||||||||||| |||||||| |||| ||||||||||||| Sbjct 3216 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCG 3162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 35493 CAATCATCTCTTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTT 35552 || ||| | ||| ||||| ||||| | | || ||||| || | ||| |||||| | Sbjct 4687 CAGTCAGCGCTTAGTTTCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCT 4628 Query 35553 GAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACC 35612 | |||||||| || |||| ||| || | || ||||||||||| ||||| || || | | Sbjct 4627 GGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGAC 4568 Query 35613 GCTGCTGGTCCGAAGGAACGC 35633 |||| ||||||| |||| || Sbjct 4567 GCTGTTGGTCCGGGGGAATGC 4547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450770485558160