Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq879 132 5e-26 seq12 127 2e-24 seq83 89.7 5e-13 seq2 82.4 8e-11 >seq879 Length=48288 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| |||||||||||||| | | |||| | Sbjct 4025 AGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGG 3966 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || || | ||||||||| || || || ||||| || Sbjct 3965 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCC 3906 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || ||||| ||| | ||||| || || || || || ||||| Sbjct 3905 TTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTG 3846 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || || | || || ||||| || ||||| Sbjct 3845 ATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || |||||||||||| | | ||| | Sbjct 2725 AGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 2666 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || ||||||| ||||||||| || || || ||||| || Sbjct 2665 CCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCC 2606 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || ||||| ||| | ||||| || || || || || ||||| Sbjct 2605 TTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTG 2546 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || || || ||||| Sbjct 2545 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| ||||| || ||||| || ||||||||||| | | |||| | Sbjct 3797 AGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 3738 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| |||||||||| |||||||| || || || |||||| Sbjct 3737 CCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCT 3681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| || ||||||||||| | | |||| | Sbjct 3267 AGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 3208 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||| |||||||||| |||||||| || || || |||||| Sbjct 3207 CCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCGGTGGGATGCCT 3151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 ||||| || | || |||| ||| ||||| |||||||| ||||| || ||||||||||| Sbjct 4673 TTTCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCA 4614 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | |||| | || || ||||| ||||| || || || | |||||| || || || Sbjct 4613 GCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCCGGG 4554 Query 134604 GGTATGCCT 134612 || |||||| Sbjct 4553 GGAATGCCT 4545 >seq12 Length=425388 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| | ||| |||||||| ||||| || ||||||||||| |||| | ||| | Sbjct 400623 AGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGC-GTGCG 400681 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| || | |||||||| ||||| || || || || Sbjct 400682 GCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTC 400741 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| ||| | ||||| ||||| || || || || || Sbjct 400742 CTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGT 400801 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || |||||||| ||||| Sbjct 400802 GATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| | ||| ||||| || ||||| || ||||||||||| |||| | ||| | Sbjct 400851 AGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGC-GTGCG 400909 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| || | ||||||||| ||||| || || || || Sbjct 400910 GCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTC 400969 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || ||||| || || || ||||| ||| | ||||| ||||| || || || || || Sbjct 400970 CTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGT 401029 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || ||||| ||||| Sbjct 401030 GATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 122 bits (134), Expect = 9e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| | ||| |||||||| ||||| || ||||||||||| |||| | ||| | Sbjct 400395 AGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGC-GTGCG 400453 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || ||||| ||||| ||||| || | |||||||| ||||| || || || || Sbjct 400454 GCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTC 400513 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| ||| | ||||| ||||| || || || || || Sbjct 400514 CTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGT 400573 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || || ||||| ||||| Sbjct 400574 GATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 116 bits (128), Expect = 4e-21 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 || |||| ||| | ||| |||||||| ||||| || ||||||||||| |||| ||||| Sbjct 401775 AGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCA---GTGTG 401831 Query 134555 AG--AGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 | || || ||||| ||||| ||||| || | |||||||| ||||| || || || Sbjct 401832 CGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCC 401891 Query 134613 TCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGA 134672 || || || || || || || ||||| ||| | ||||| ||||| || || || || Sbjct 401892 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGC 401951 Query 134673 GTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || || || | || || || || || ||||| Sbjct 401952 GTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 >seq83 Length=234864 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || || || ||||| |||||||||||||| | | |||| | Sbjct 63337 AGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGG 63278 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 || || ||||| ||||||||||| || | ||||||||| || || || |||||| Sbjct 63277 CCATCCTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGGAATGCCT 63221 >seq2 Length=533353 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/173 (71%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 9040 GTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTG 9099 |||| |||||||||||||| ||| | | ||| | || | || | || | ||| Sbjct 425566 GTGGCGGCCAACGGCAGCGTGCAGGAGCTGGAC---ATCCCCGACAACCTAAAGGCGCTC 425510 Query 9100 TATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGC 9159 || || || || ||||| || ||||| |||||||| | | |||||| ||||| | ||| Sbjct 425509 TACAAGACGGTCTGGGAGATCAAGCAGCGCACGCTGGTGGACATGGCGGCGGACCGCGGC 425450 Query 9160 GCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGT-AGCCGCACCAACTT 9211 || | || || ||||| || || || ||||||||| | ||| | ||||||| Sbjct 425449 GCGTACATCGACCAGAGCCAGTCGTTCAACGTGTTCATGAGCGACCCCAACTT 425397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505372485697040