Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq3865 809 0.0 seq2255 641 4e-179 seq292 84.2 3e-11 >seq3865 Length=1303 Score = 809 bits (896), Expect = 0.0 Identities = 779/995 (78%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 ||||| |||||| | || || || | |||||||| || | |||||||| |||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 157736 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157794 ||||||||| || | | ||||| |||||| |||||| |||| ||||| || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 157795 CCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAA 157854 || || ||||| ||||| ||||| ||||||||| ||||||| | | || |||||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 157855 CATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCAT 157914 |||||| |||||||| || | |||| ||| ||||| || ||| | ||||||||||| | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 157915 CTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGT 157974 |||||||| |||||| | ||||||||| | || ||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 157975 ATTCCACTTCCTGATCGGCATCTATGC--CTATATGGGACGTGAGTGGGAACTCTCTTAC 158032 | ||||||| | | || | | ||| ||| ||||| ||||| |||||| | |||| | Sbjct 579 TTGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 158033 CGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGT 158092 |||||||||||||| ||||||||| |||||| || ||||| ||||| || || || | | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 158093 GCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158152 ||||| ||| || |||| ||| ||||||||||||| ||||| || | ||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 158153 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158212 || ||||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 158213 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 || ||||| ||| | ||||||||||| || || ||||| ||| | |||||||| ||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 158273 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 || | | ||||| || || | | |||||||| ||||||| || ||| ||| Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTC 158392 ||||| ||||||||||| ||||| || ||||||||||| || || || || ||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 |||||||| || |||||||||||||||||||||||||| ||||| || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 158512 ||||| |||||||| |||| ||||||||||| || | || | ||||| ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 158513 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158572 ||||| |||||||||||||||||||| || | |||| ||| |||||||| || ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 158573 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158632 || ||||| || | | ||||| ||| | ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 158633 GCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667 || ||||||||||| || || | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 641 bits (710), Expect = 4e-179 Identities = 760/1025 (74%), Gaps = 6/1025 (1%) Strand=Plus/Plus Query 159376 TGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 159435 ||||| |||| | || |||||| | | ||| || || || || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 159436 GGACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACT 159495 ||| | |||| | || |||||| | || | || |||||| | ||||| || ||| Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 159496 TTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTT 159555 ||| | || ||||||||| ||||| | |||| ||| ||| | |||||| ||| || Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 159556 CTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 159614 | || || ||||| || || || || || |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 159615 GGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTT 159674 ||||||||| ||||||| ||||| ||| ||||| |||||||| || | ||| | || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 159675 TGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGC 159734 | ||||| | |||||| |||| | | | || ||||| ||| |||| ||||||||||| || Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 159735 TCGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT 159794 ||| |||| | ||||| ||||| |||||||| ||||||| |||||||||||| || Sbjct 680 ACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATT 739 Query 159795 --TGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGT 159852 ||| || ||| | || || || | ||||| || ||||||||||| |||||| Sbjct 740 CACTTCA--GTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGT 797 Query 159853 TTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACC 159912 || || || || |||||||| | ||| | || ||| | ||||| |||||||||||||| Sbjct 798 TTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACG 857 Query 159913 CTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCA 159972 || ||||| ||||| |||||||| ||||||||| | |||||| || | || ||||| Sbjct 858 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 917 Query 159973 ATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTT 160032 || || ||||||||||| || |||||||| |||||||| || || || |||||||| Sbjct 918 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTC 977 Query 160033 AAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTC 160092 || || | || ||||||| |||||| || || |||||||| ||||||||||| ||| Sbjct 978 CGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTC 1037 Query 160093 TGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTG 160152 ||||| || |||||||||||||| || || ||||| || ||| | || || |||||||| Sbjct 1038 TGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTA 1097 Query 160153 TTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAAC 160212 || || || |||| ||| |||||| || ||||||| | |||||| | || || ||| Sbjct 1098 TTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAAC 1157 Query 160213 CTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAG 160272 | ||||||||||| ||||| || || ||| | ||||||||||| || || || || Sbjct 1158 TTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAA 1217 Query 160273 ACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCT 160332 || |||||||| || |||||||| | |||||||| |||||||||||||||| || Sbjct 1218 ACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 1277 Query 160333 GATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACTG 160392 || ||||| |||||| || | ||||| || |||||| ||||| | |||||||| || Sbjct 1278 GACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTA 1337 Query 160393 TGATT 160397 | ||| Sbjct 1338 TAATT 1342 >seq292 Length=128933 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 157871 GTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCT 157930 || || || | ||| ||||| || ||| | ||||||||||| | |||||||| |||||| Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 157931 CTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTC 157984 | ||||| ||| | || ||| |||||||| |||| | || || | ||||||| Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572994618194400