Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq3865 778 0.0 seq2255 499 3e-136 seq721 111 2e-19 >seq3865 Length=1303 Score = 778 bits (862), Expect = 0.0 Identities = 775/996 (78%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 159959 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 160018 |||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 160019 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 160077 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 160078 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 160137 | || || ||||||||||| ||||||||||| || ||||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 160138 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 160197 ||||||| |||||||| || | || |||| ||||| |||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 160198 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 160257 | |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 160258 TATTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAGTGGGAACTTTCATAC 160316 | | |||||| | | || | | ||| || ||||| ||||| |||||| | || | | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 160317 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 160376 |||||||||||||| || |||||| |||||| || ||||| ||||| || || || || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 160377 GCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 160436 || || ||| | | || ||| ||||||||||||| ||||| || | ||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 160437 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160496 || ||||||||||| |||| |||| | ||||||||||| |||||||| ||||||||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 160497 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCAC 160556 || ||||||||| | || |||||||| || || ||||| ||||| |||||||| |||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 160557 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 || | | ||||| || || | | |||||||| ||||||| || ||| ||| Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| ||||||||||||||||| || ||||||||||| || || || |||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 |||||||| || |||||||| || |||||||||||||| |||||| | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCATT 160795 || || ||||||||| |||| ||||||||||||||| | ||| ||| | || ||||| || Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGT-TTATCAACTATGGCTTT 1115 Query 160796 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAA 160855 |||||| |||||||||||||||||||| || | | || ||||||||||||| | || Sbjct 1116 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAA 1175 Query 160856 CACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 160915 ||| ||||| ||| | | || |||||| | ||||||||||| ||||| || ||||| Sbjct 1176 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 1235 Query 160916 CGCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 ||| ||||||||||| || ||| | ||| ||| ||| Sbjct 1236 CGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 499 bits (552), Expect = 3e-136 Identities = 723/1011 (72%), Gaps = 10/1011 (1%) Strand=Plus/Plus Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 161759 ||||||||| | | || |||||||| || || || ||||| ||| || || | || Sbjct 336 GACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGA-TTATTACTATT 394 Query 161760 CCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTG 161818 ||| |||||| | || | || |||||| | ||||| || ||||| | || || Sbjct 395 ACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTG 454 Query 161819 GTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGT 161878 ||| || || || | |||| ||| || | || ||| ||||| | || || | || Sbjct 455 GTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGT 514 Query 161879 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TGGGGTCCTGAGGCTC 161937 | || ||||| | |||| ||| ||| || || |||| ||||||||||| |||| Sbjct 515 TTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTC 573 Query 161938 AAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATG 161997 |||| || || || ||| |||||||| || | ||| |||| | || | || | Sbjct 574 AAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACG 633 Query 161998 GTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTA 162057 || | || | ||||||| |||||| | ||||| |||||| | |||||| || Sbjct 634 GTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGTTCAGTTAACT 693 Query 162058 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT--TGTCAGCGTCTT 162115 | ||||| ||||| |||||||| ||||||| |||||||||||| || ||| || || Sbjct 694 TACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCA--GTTTT 751 Query 162116 CCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 162175 | | || ||||| || ||||| || ||||||| || ||||| ||||| || || || Sbjct 752 CTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGCCGC 811 Query 162176 AATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCA 162235 |||||| | ||| | || || | || || ||||| |||||||| || ||||| ||||| Sbjct 812 AATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATTCCA 871 Query 162236 TATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCAC 162295 |||||||| ||||||||| | |||||| || | ||| |||||||||||| | || Sbjct 872 CATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTAC 931 Query 162296 AGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTC 162355 |||||||| ||||||| || || || || || ||||| || || || | | Sbjct 932 TGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAACCC 991 Query 162356 GACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 162415 || || | ||||| || || |||||||| ||||||||||| |||||||| || ||||| Sbjct 992 AACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAATCTT 1051 Query 162416 CGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 162475 |||| |||| || || ||||| || ||| | || || |||||||| || || || |||| Sbjct 1052 CGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGTTAC 1111 Query 162476 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 162535 ||| |||||| || ||||||| | |||||| | || | ||| | ||||||||||| Sbjct 1112 TGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTACGA 1171 Query 162536 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAA 162595 ||||| || || || | ||||||||||| || ||||| ||||||||||||||||| Sbjct 1172 CTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACACTAA 1231 Query 162596 GAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGA 162655 ||||| || || |||||||| | ||||| ||| | || || |||||||| ||||| Sbjct 1232 AAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCATGA 1291 Query 162656 GAACTTTA-TCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 | |||| | |||||||||||||| | ||| | || ||||| || |||| Sbjct 1292 -ACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 1341 >seq721 Length=61483 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 161167 CTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGT 161226 ||| ||||| ||||| ||||| ||||| ||| || || || | | || || || Sbjct 39593 CTACTCTTGCCGTGCCGGTGCCTGCTCAAGCTGCGCTGGCAAGGTCGAGGCCGGCACCGT 39652 Query 161227 AGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGAC 161286 ||||||||||||||||||||| ||||||||| |||||||| || ||| | |||| Sbjct 39653 CGACCAGTCTGACCAGTCCTTCCTGGATGATGGCCAGATTGGCAACGGCTTCGTCCTGAC 39712 Query 161287 ATGTGTTGCATATCCTACTAGCGATTGTG-TGATTCAAACTGAGCAAGAGGAGAATCTGT 161345 || ||||| || || || ||||| |||| ||| | || ||||| |||||||| |||| Sbjct 39713 CTGCGTTGCGTACCCCACCAGCGA-TGTGACGATCCTCACCGAGCAGGAGGAGAAGCTGT 39771 Query 161346 ACT 161348 ||| Sbjct 39772 ACT 39774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559475311432400