Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq3865 783 0.0 seq2255 520 1e-142 >seq3865 Length=1303 Score = 783 bits (868), Expect = 0.0 Identities = 765/980 (78%), Gaps = 4/980 (0%) Strand=Plus/Plus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 |||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 181099 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 181158 | || || ||||||||||| ||||||||||| || ||||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 181159 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 181218 ||||||| |||||||| || | || |||| ||||| |||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 181219 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 181278 | |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 181279 TCTTTCACTTCCTTATCGGCATTT-ATGCATACATGGGACGTGAATGGGAACTCTCTTAC 181337 | | |||||| | | || ||| ||| |||||||| |||||||||||| | |||| | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 181338 CGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCT 181397 || ||||||||||| || |||||| ||| || |||||||| ||||| ||||| || || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 181398 GCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGC 181457 || || ||| || |||| ||| ||||||||||||| |||||||||| ||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 181458 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCAT 181517 || |||||||| ||||||| |||| | || |||||||| || |||||||| || ||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 181518 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCAC 181577 || ||||||||||| ||||| || ||||| ||||||||||| | ||| |||||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 181578 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 181637 |||||||| ||||||||||| | ||||||| || ||||||| || ||| ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 |||||| ||||| ||||| ||||| |||||||||||||| || || |||||||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 ||||| || || |||||||| ||||||||||||||||| |||||| | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 181758 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 181817 || || ||||||||| | || ||||||||||| || | || || || ||||| || Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 181818 AACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAAC 181877 ||||| || || |||||||||||||| || | | ||| ||||| ||||| | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 181878 ACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 181937 || ||||| ||| | |||||||||| | || |||||||| |||||||| || ||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 181938 GCGCACAACTTCCCGCTTGA 181957 |||||||||||||| || || Sbjct 1237 GCGCACAACTTCCCTCTAGA 1256 >seq2255 Length=6208 Score = 520 bits (576), Expect = 1e-142 Identities = 736/1022 (72%), Gaps = 12/1022 (1%) Strand=Plus/Plus Query 182358 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 182417 |||||||||| | ||||||||| | | || || || || || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 182418 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 182477 ||| | |||| | || |||||| | || | || |||||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 182478 TTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 182537 |||||||| ||||||||| ||||| | ||| |||| || | |||||| |||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 182538 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 182596 | || || ||||| || || || || || |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 182597 GGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATT 182655 ||||||||| |||| || || ||| || || ||||| |||||||| || | ||| || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACA-CGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 182656 TCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTG 182715 | | ||| | |||||| | || | | | |||||||||||| | | ||||||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 182716 CTCGCCTGATTGGAATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTA 182774 | || | | | | | | | || ||||| || ||||| || |||| ||||||||||||| Sbjct 679 CACGT-TCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTA 737 Query 182775 TT--CGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGT 182832 || | ||| || ||| | || || ||||| || || || |||||| || || || Sbjct 738 TTCACTTCA--GTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTA 795 Query 182833 CCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGA 182892 |||||||| || || |||||| | ||| | || ||| | ||||| ||||||||||||| Sbjct 796 GTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGA 855 Query 182893 CACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTG 182952 | || ||||| ||||| |||||||| ||||||||| | | |||| || | | ||| Sbjct 856 CGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 915 Query 182953 CTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACAT 183012 |||| || |||| || || || || || || | |||||| || || || ||||||| Sbjct 916 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACAT 975 Query 183013 TTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTT 183072 | || ||| | | ||||| | || || || || || |||||||| || || |||| Sbjct 976 TCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTT 1035 Query 183073 TTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGT 183132 | ||||| ||||||||||| ||||| || || || |||||||| |||||||| |||| Sbjct 1036 TCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGT 1095 Query 183133 TGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTA 183192 | || || || || | ||| | ||| | || ||||||| | ||||| | || ||| Sbjct 1096 TATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGC-ATTA 1154 Query 183193 ATCTT-CGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTC 183251 | ||| |||||||| || || || ||||| ||| | ||||||||||| || |||||| Sbjct 1155 AACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTC 1214 Query 183252 GAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCT 183311 || ||||||||||| || ||||||||||| |||||||| | ||||||||| |||| || Sbjct 1215 GAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCT 1274 Query 183312 GCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCA 183371 || ||||| |||||| || | ||||| |||||||| ||||| | |||||||| Sbjct 1275 CAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCT 1334 Query 183372 CT 183373 || Sbjct 1335 CT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614586085482560