Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq3865 791 0.0 seq2255 538 5e-148 seq292 95.1 2e-14 seq370 87.8 3e-12 >seq3865 Length=1303 Score = 791 bits (876), Expect = 0.0 Identities = 775/994 (78%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 174459 TGGGATCAGTTTTGTTCCTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTC 174518 |||| || || ||| ||| | || || || | || ||| | ||| |||||||||| Sbjct 271 TGGGCTCGTTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTT 330 Query 174519 GGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTATCGCTTTCGT 174577 ||||| | ||||||||| || ||| | ||||| | ||| ||||| ||||||||||| Sbjct 331 GGTGTAATCATGATTCCTTGCTTATTAACAGCAACA-TCTGTATTCATCATCGCTTTCGT 389 Query 174578 GGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTA 174637 | ||||| ||||| ||||||||||| |||||||||||||| ||||||| | | || Sbjct 390 TGCAGCTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATA 449 Query 174638 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTT 174697 || ||||||||||| |||||||| || | |||| ||| ||||| || ||| ||||||| Sbjct 450 CGGTAACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTT 509 Query 174698 CTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCA 174757 ||||||| | |||||||| || | | ||||| ||| | |||||||||||||||| ||| Sbjct 510 CTACCCAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCA 569 Query 174758 ACTAGTTGTCTTCCACTTCCTTATT-GGTATCTACGCCTATATGGGACGTGAGTGGGAAC 174816 | || | || | |||||| |||||| ||| | | | ||| ||||| ||||| |||||| Sbjct 570 ATTAATCGTTTGCCACTT-CTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAAT 628 Query 174817 TCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAG 174876 | |||| |||||||||||| | || |||||| |||||| ||||||||||||||||||| Sbjct 629 TATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAG 688 Query 174877 CAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGC 174936 | ||| | ||||| ||| || |||| ||| ||||||||||||||||||| |||| |||| Sbjct 689 CTGCTACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGC 748 Query 174937 CCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCT 174996 | || ||||| ||||| || ||||||| |||| | || |||||||| ||||| |||||| Sbjct 749 CTTTAGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCC 808 Query 174997 TGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAG 175056 | |||||||| ||||||||||| || || || ||||| || |||||||| || ||||| | Sbjct 809 TTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTG 868 Query 175057 CGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCAC 175116 | ||||| ||||| | ||||| ||||| | ||||||| |||||||||| || ||| Sbjct 869 CAATGCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAG 928 Query 175117 AGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATG 175176 ||| ||||||| ||||| ||||| ||||| || || |||||||| || || || | Sbjct 929 CTAACGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACG 988 Query 175177 GCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACT 175236 | ||||| |||||||| || |||||||||||||||||||||||||| || ||| | |||| Sbjct 989 GTTACTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACT 1048 Query 175237 TCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAA 175296 |||||||||| || ||||| || | |||||||||||||| || | ||| | || || | Sbjct 1049 TCTTCTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTA 1108 Query 175297 TGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAG 175356 |||| |||||||| || ||||||||||||||||| || ||| | ||| |||||| | | Sbjct 1109 TGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTG 1168 Query 175357 TATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATG 175416 |||| ||||| ||||| || | | ||| | ||| | || |||||||||||||| | Sbjct 1169 TATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACG 1228 Query 175417 AGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 | | || || ||||||||||| ||||| || || Sbjct 1229 AACGTAACGCGCACAACTTCCCTCTAGACTTAGC 1262 >seq2255 Length=6208 Score = 538 bits (596), Expect = 5e-148 Identities = 709/969 (73%), Gaps = 14/969 (1%) Strand=Plus/Plus Query 175899 GGCTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACT 175958 || ||||| |||||| |||| | || |||||| | || | || || ||| | ||| Sbjct 372 GGTTGGTCAGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACT 431 Query 175959 GGCACAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGT 176018 || || |||||||| || ||||||||| || || | ||| |||| || | || ||| Sbjct 432 GGTACTACTTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGT 491 Query 176019 GCTAACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTT 176078 |||||| | || || ||||| || || || || || |||| ||| ||| || || Sbjct 492 TGTAACTTCTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATT 550 Query 176079 CTACTT-TGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCT 176137 | ||| |||||||||||| |||| || ||||| || ||| |||||||| || | Sbjct 551 ATTCTTATGGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTT 610 Query 176138 TTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTT 176197 ||| | ||| ||||| | |||||| | || | | | ||||| |||||| | ||||| || Sbjct 611 ATGGGCTTTTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATT 670 Query 176198 TGAACTGGCAAGACTCA-TTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTA 176256 |||| | ||| | ||| || | ||||| |||||||||||||||||| || ||||| Sbjct 671 TGAAATCGCACGT-TCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTA 729 Query 176257 TCGCTGTATTTG--TCAGTGTGTTTCTTC-TATACCCACTAGGTCAATCTTCCTGGTTCT 176313 | |||||||| ||||| |||||| | ||||| |||||||||| ||||||| Sbjct 730 TTGCTGTATTCACTTCAGT---TTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCT 786 Query 176314 TTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCC 176373 |||| || |||||||| || |||||||| | ||| | || || | ||||| |||| Sbjct 787 TTGCTCCTAGTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCC 846 Query 176374 ACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCAC 176433 |||||||||| || ||||| ||||| |||||||| ||||||||| | |||||| || Sbjct 847 ACAACTGGACGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTT 906 Query 176434 TACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGA 176493 || ||| ||| || || || | |||||||||||| || ||| |||||| || | || | Sbjct 907 TATTATGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTG-ACGGT 965 Query 176494 AC-AACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACT 176552 | ||||| ||| ||| ||| | | || || | ||||| || || || ||||||||| Sbjct 966 GCGAACACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACT 1025 Query 176553 GCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCAC 176612 || ||||| |||||||| ||||||||||| ||||| || || || |||||| | ||| Sbjct 1026 GCAAACCGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACAC 1085 Query 176613 TTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGG 176672 ||||| ||||| || || || || | ||| | ||| | ||| |||||| | ||||| Sbjct 1086 TTCTTCATGTTATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGT 1145 Query 176673 CTTGCTCTTAATCTT-CGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGA 176731 | || |||| ||| |||||||| || || || ||||| ||| | ||||||||||| Sbjct 1146 TTAGC-ATTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGA 1204 Query 176732 TCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATG 176791 || ||||| ||||| |||||||| || |||||||||||||| ||||| | | || || Sbjct 1205 CCCAGAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTG 1264 Query 176792 GATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAG 176851 |||||| || || ||||| ||||| || ||||||||||||||||| ||||| | Sbjct 1265 GATGGCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCG 1324 Query 176852 AGGTAACGC 176860 |||||||| Sbjct 1325 TGGTAACGC 1333 >seq292 Length=128933 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/119 (78%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 174663 GTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACA 174722 || || || | ||| ||||| || ||| |||||||||||||| | |||||||| || | Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 174723 CTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTAT 174781 | ||||||||| | |||||| |||||||| |||| |||| || | |||||| ||||| Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTAT 40672 >seq370 Length=112093 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 161315 TACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACA 161374 |||||||| |||||| ||| |||| || |||| || ||| ||||||| || || Sbjct 45688 TACCAGGCCTCCACCTCCGAGCTGTACGGCCTGGTGCAGGAGGTGCCACAGAGCGAGACT 45629 Query 161375 ACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTA 161434 || || ||||||||||| ||||| || | || || || |||||||| | ||||| | Sbjct 45628 ACCCCCTTCTACCCACGCTCTCCCTACGCTGTGGCCAAGCTCTATGGCTTCTGGATCATT 45569 Query 161435 AAGAACTACAG 161445 ||||||||||| Sbjct 45568 AAGAACTACAG 45558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729892172859760