Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq3865 769 0.0 seq2255 511 6e-140 >seq3865 Length=1303 Score = 769 bits (852), Expect = 0.0 Identities = 761/979 (78%), Gaps = 4/979 (0%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 |||||||| | || ||||||| |||||| |||||| |||| ||||| || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || ||||||||||| ||||||||||| || ||||||| | | || || ||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 |||||| |||||||| || | || |||| ||||| |||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 178148 ATTTCACTTCCTCATTGGTATCT-ATGCATACATGGGACGTGAGTGGGAACTTTCATACC 178206 | |||||| | | ||| | | ||| |||||||| ||||| |||||| | || | || Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 178207 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGG 178266 ||||||||||||| || |||||| |||||| |||||||| ||||| ||||| || | | Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 178267 CAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCA 178326 |||| ||| | |||| ||| |||||||||||||||| ||||||| ||||| | || | Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 178327 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACC 178386 | |||||||| ||||||| |||| | || |||||||| ||||||||||| || ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 178387 CCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACG 178446 | ||||||||||| ||||| || ||||| || |||||||| | ||| ||||||||||| Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 178447 GTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATG 178506 ||||||| ||||||||||| | | |||||||| ||||||| |||||| ||| || Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTG 937 Query 178507 GTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 178566 |||| ||||| ||||| ||||| |||||||||||||| || || || || ||||| | Sbjct 938 GTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTG 997 Query 178567 GTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 178626 ||||||| || |||||||| ||||||||||||||||| |||||| | ||||||||| | | Sbjct 998 GTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 1057 Query 178627 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 178686 | || ||||||||| | || ||||||||||| || | || || || ||||| || | Sbjct 1058 CTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCA 1117 Query 178687 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178746 |||| || || |||||||||||||| || | | ||| ||||| ||||| | |||| Sbjct 1118 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACA 1177 Query 178747 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 178806 | ||||| ||| | |||||||||| | || |||||||| |||||||| || |||| Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 1237 Query 178807 CGCACAACTTCCCGCTTGA 178825 ||||||||||||| || || Sbjct 1238 CGCACAACTTCCCTCTAGA 1256 >seq2255 Length=6208 Score = 511 bits (566), Expect = 6e-140 Identities = 728/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 179220 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 179279 |||||||||| | ||||||||| | | || || || || || || |||||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 179280 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179339 ||| | |||| | || |||||| | || | || |||||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 179340 TTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTT 179399 |||||||| ||||||||| ||||| | |||| ||| || | || ||| |||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 179400 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 179458 | || || ||||| || || || || || |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 179459 GGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATT 179517 ||||||||| |||| || || ||| || || ||||| |||||||| || | ||| || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACA-CGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 179518 TCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTG 179577 | | ||| | |||||| | || | | | |||||||||||| | | ||||||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 179578 CTCGCCTGATTGGTATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTAT 179637 | || || | | || ||||| || ||||| || |||| |||||||||||||| Sbjct 679 CACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTAT 738 Query 179638 TCG--TCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTC 179695 || ||||| |||| | || || ||||| || || || |||||| || || || Sbjct 739 TCACTTCAGT--TTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 179696 CTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGAC 179755 |||||||| || || |||||| | ||| | | ||| | ||||| |||||||||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGAC 856 Query 179756 GCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGC 179815 ||| ||||| ||||| |||||||| ||||||||| | |||| | || | | |||| Sbjct 857 GCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 916 Query 179816 TATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTT 179875 ||| || || | |||||| || || ||||| | |||||| || || || || || || Sbjct 917 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATT 976 Query 179876 TAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 179935 || || | | || || | |||||| || || |||||||| ||||||||||| || Sbjct 977 CCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTT 1036 Query 179936 CTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 179995 |||||| || ||||||||| |||| || || ||||| || ||| | || || |||||||| Sbjct 1037 CTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTT 1096 Query 179996 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 180055 || || || |||| ||| |||||| || ||||||| | |||||| | || | || Sbjct 1097 ATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAA 1156 Query 180056 CCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGA 180115 | | ||||||||||| ||||| || || || | ||||||||||| || ||||| || Sbjct 1157 CTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGA 1216 Query 180116 GACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGT 180175 || |||||||| || ||||| ||||| |||||||| | ||||| ||| |||| | Sbjct 1217 AACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 1276 Query 180176 TGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 || ||||| ||||| || ||||||||||||||||| | || | ||||| || Sbjct 1277 AGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGC 1333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605978526857760