Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq3865 789 0.0 seq2255 477 1e-129 >seq3865 Length=1303 Score = 789 bits (874), Expect = 0.0 Identities = 775/995 (78%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 |||||| |||||| | |||||||| | ||||| | || |||||||||| || ||| | Sbjct 279 TTTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAAT 338 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 |||||||| | || ||||||| |||||| |||||| |||| ||||| || |||| Sbjct 339 CATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTC 397 Query 158497 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 158556 | || || ||||||||||| ||||||||||| || ||||||| | | || ||||||| Sbjct 398 CTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACA 457 Query 158557 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 158616 ||||||| |||||||| || | || |||| ||||| |||||| | |||||||| || Sbjct 458 ACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAG 517 Query 158617 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 158676 | |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | | Sbjct 518 TATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCG 577 Query 158677 TCTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAATGGGAACTTTCATAC 158735 | | |||||| | | || | | ||| || ||||| |||||||||||| | || | | Sbjct 578 TTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 158736 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCT 158795 || ||||||||||| || |||||| |||||| || ||||||||||| || || || || Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 158796 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158855 || || ||| | |||| ||| ||||||||||||| ||||| || | ||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 158856 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158915 || ||||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 158916 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 || ||||| ||| | ||||||||||| || || ||||| ||| | |||||||| ||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 158976 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 || | | ||||| || || | | |||||||| ||||||| || ||| ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 |||||| ||||| ||||| ||||||||||| || ||||| || || || |||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 |||||||| || |||||||||||||||||||||||||| ||||| || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215 ||||| |||||||| |||| ||||||||||| || | || | ||||| ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| |||||||||||||||||||| || | |||| ||| |||||||| || ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 159335 || ||||| || | | |||||||| | ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 159336 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 || ||||||||||| || ||| | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 477 bits (528), Expect = 1e-129 Identities = 722/1014 (71%), Gaps = 16/1014 (2%) Strand=Plus/Plus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 ||||||||| | | || |||||||| || || || ||||| ||| || || | || Sbjct 336 GACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGA-TTATTACTATT 394 Query 159971 CCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTG 160029 ||| |||||| | || | || |||||| | ||||| || ||||| | || || Sbjct 395 ACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACTTTTGTTACTTCTTG 454 Query 160030 GTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGT 160089 ||| || || || | |||| ||| || | || ||| ||||| | || || | || Sbjct 455 GTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCTGT 514 Query 160090 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TGGGGTCCTGAGGCTC 160148 | || ||||| | |||| ||| ||| || || |||| ||||||||||| |||| Sbjct 515 TTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATGGGGTCCTGAAGCTC 573 Query 160149 AAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATG 160208 |||| || || | ||| |||||||| || | ||| |||| | || | || | Sbjct 574 AAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTTTATTGCTTTACACG 633 Query 160209 GTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA 160268 || | || | ||||||| |||||| | ||||| |||||| | |||||| ||| | || Sbjct 634 GTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGCACGT-TCA--GTTA 690 Query 160269 TC---CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTG--TCAGCGT 160323 | ||||| ||||| |||||||| ||||||| |||||||||||| || |||| | Sbjct 691 ACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTATTCACTTCAG--T 748 Query 160324 ATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGC 160383 ||| | || ||||| || ||||| || ||||||| || ||||| ||||| || || Sbjct 749 TTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGTTTTGGTGTTGC 808 Query 160384 AGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTT 160443 |||||||| | ||| | || ||| | || || || |||||||||||||||||||| || Sbjct 809 CGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACGCTTAACCCATT 868 Query 160444 CCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGT 160503 ||| |||||||| ||||||||| | |||| | || | | |||| || || || | Sbjct 869 CCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGC 928 Query 160504 TACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGA 160563 |||||| || |||||| | | |||||| || || || || || || || || | Sbjct 929 TACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTCCGTGCATTCAA 988 Query 160564 TTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGAT 160623 | || || | |||||| || || |||||||| ||||||||||| |||||||| || || Sbjct 989 CCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTCTGGTCTCAAAT 1048 Query 160624 CTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGT 160683 ||||||| |||| || || ||||| || ||| | || || |||||||| || || || || Sbjct 1049 CTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTATTCGTACCAGT 1108 Query 160684 TATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTA 160743 || ||| | |||| || |||||| | |||||| | || | || | |||||||| Sbjct 1109 TACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAACTTACGTGCTTA 1168 Query 160744 CGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACAC 160803 ||| ||||| ||||| ||| | ||||||||||| ||||| || || || |||||||| Sbjct 1169 CGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGAAACGTTCTACAC 1228 Query 160804 CAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCA 160863 || |||||||| || |||||||| | ||||| ||| | || || |||||||| || Sbjct 1229 TAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCGCA 1288 Query 160864 TGAGAACTTTA-TCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 ||| | |||| | |||||||||||||| | ||| | || ||||| || |||| Sbjct 1289 TGA-ACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCTATAAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552445271916160