Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq3865 800 0.0 seq2255 565 3e-156 seq292 100 3e-16 >seq3865 Length=1303 Score = 800 bits (886), Expect = 0.0 Identities = 778/995 (78%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| |||||| | || || || | || ||||| || | |||||||| ||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||||||| || | | ||||| |||||| |||||| | |||||||| ||||| || Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || || || ||||| ||||||||||| || ||||||| | | || || ||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||| ||||||||||| |||| | ||| ||||| |||||| ||||||||||||| | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | || |||||| | || ||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 179160 CTTCCACTTCCTTATCGGCATCTATGC--CTATATGGGACGTGAGTGGGAACTTTCTTAC 179217 | |||||| ||||| | | | ||| ||| ||||| ||||| |||||| | |||| | Sbjct 579 TTGCCACTT-CTTATTAG-GTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 179218 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGT 179277 ||| |||||||||||||||||||| ||| || |||||||||||||| || ||||| | | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 179278 GCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGT 179337 ||||| ||| | |||| ||| ||||||||||||| |||||||| | ||||||| | ||| Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 179338 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 179397 || ||||||||||| |||| |||| | ||||||||||| ||||||||||||||||||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 179398 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 179457 || ||||| ||| | ||||||||||| || || ||||| ||| | |||||||| |||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 179458 GGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTAT 179517 || | | ||||| || || | | |||||||||||||| | || ||| ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 179577 ||||| ||||| ||||| ||||| || || |||||||| || || || || ||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 179578 GGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTT 179637 |||||||| || |||||||| || || || |||||||| || || || ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 179638 GCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTC 179697 ||||| ||||| || |||| ||||||||||||||| | || | ||||| ||||| ||| Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTC 1116 Query 179698 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAAC 179757 ||||| |||||||||||||||||||| || | ||||| |||||| ||||| | ||| Sbjct 1117 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAAC 1176 Query 179758 ACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAAC 179817 || ||||| ||| | | |||||||| || ||||||||||| ||||| || |||||| Sbjct 1177 ACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAAC 1236 Query 179818 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852 || ||||||||||| || ||| | ||| ||| ||| Sbjct 1237 GCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 565 bits (626), Expect = 3e-156 Identities = 742/1018 (73%), Gaps = 10/1018 (1%) Strand=Plus/Plus Query 180018 TGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCT 180077 |||||||||| | ||||||||| | | ||||| || ||||| || || ||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 180078 GGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 180137 ||| || |||| | || |||||| | || | || |||||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 180138 TTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 180197 ||||| || ||||||||| ||||| | ||| |||| || | |||||| |||||| Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 180198 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-TG 180256 | || || ||||| || || || || | |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 180257 GGGTCCTGAGTCTCAGGG-GAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATT 180315 ||||||||| |||| || || ||| || || ||||| |||||||| || | ||| || Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACA-CGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 180316 TCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGG 180375 | | ||| | |||||| | || | ||||||| || ||| |||| || |||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 180376 CACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTAT 180435 ||||| || | ||||| ||||| |||||||||||||||| |||||| ||||||| Sbjct 679 CACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTAT 738 Query 180436 TTG--TCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTC 180493 | |||| | || | || ||||| | ||||| || |||||||||||||||| Sbjct 739 TCACTTCAG--TTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 180494 TTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTT-CAGGGTTTCCACAACTGGA 180552 |||||| || || |||||||| | ||| | || ||||| ||||| ||||||||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCAT-CTTATTCTTCCAGGGGTTCCACAACTGGA 855 Query 180553 CCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAG 180612 | || ||||| ||||| |||||||| ||||||||| | |||||| || || ||| | Sbjct 856 CGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 915 Query 180613 CAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCT 180672 | || || || | ||||| || |||||| | | |||||| || || || ||||| | Sbjct 916 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACAT 975 Query 180673 TTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCT 180732 | ||||| | |||| |||| || ||||| ||||||||||| ||||||||||| | Sbjct 976 TCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTT 1035 Query 180733 TCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGT 180792 ||||||| || ||||||||| |||| || || ||||| || ||| | || || ||||||| Sbjct 1036 TCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGT 1095 Query 180793 TGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCA 180852 | || || || |||| ||| |||||| || ||||||| | |||||| | || | | Sbjct 1096 TATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAA 1155 Query 180853 ACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCG 180912 || | ||||||||||| ||||| ||||| || | ||||||||||| || ||||||| Sbjct 1156 ACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCG 1215 Query 180913 AGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTG 180972 | ||||||||||| || |||||||| | |||||||| | ||||| ||| |||| || Sbjct 1216 AAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTC 1275 Query 180973 CCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || ||||| || ||| || | ||||| |||||||| |||| | |||||||| Sbjct 1276 AAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGC 1333 >seq292 Length=128933 Score = 100 bits (110), Expect = 3e-16 Identities = 96/122 (79%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 179054 CTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCAT 179113 |||| ||||||| ||| ||||| |||||| ||||||||||||| | |||||||| |||| Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 179114 CACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTA 179173 | | || || ||| | || ||| |||||||| |||| | || || | |||||| |||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTA 40673 Query 179174 TC 179175 || Sbjct 40672 TC 40671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610298305349760