Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq879 125 6e-24 seq12 102 7e-17 >seq879 Length=48288 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| |||| |||| || | |||||| || || ||||| |||||||| Sbjct 4036 TGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAG 3977 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || || ||||| || |||||| | ||||||||||| || ||||| | Sbjct 3976 CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGG 3917 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | || | | | || | ||||| | | |||| Sbjct 3916 GAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAA 3857 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | |||||| ||||| || || || ||||| ||||| Sbjct 3856 CCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | ||||| || || || || ||||||||| Sbjct 2736 TGCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 2677 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || ||||| || |||||| |||| |||||||| || ||||| | Sbjct 2676 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGG 2617 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | || | | | || | ||||| | | |||| Sbjct 2616 GAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAA 2557 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| ||||| || ||||||||||| ||||| Sbjct 2556 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 >seq12 Length=425388 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||||| |||| ||||| || | |||||| || || || || |||||||| Sbjct 400840 TGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAG 400899 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || ||||| || ||||| | ||||||||||| || || || | Sbjct 400900 CCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGG 400959 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| | || | | | || | ||||| | | || | Sbjct 400960 GGATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGA 401019 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| ||||| || || ||||| || ||||| Sbjct 401020 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424913156201424