Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq310 123 3e-23 seq1341 118 1e-21 seq135 91.5 2e-13 >seq310 Length=124157 Score = 123 bits (136), Expect = 3e-23 Identities = 223/324 (69%), Gaps = 8/324 (2%) Strand=Plus/Plus Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945 ||| | ||| |||||||| ||| || || | ||| || | || |||||| | |||||| Sbjct 85291 CGGCCCGCGAGGATGGCAGCCTCGTTCAGCAAGTTGGCGAGGTTGGCACCGGCGAAGCCG 85350 Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGCG 14005 | || || | |||| | | |||| |||||| ||| ||| |||||||| |||||| Sbjct 85351 GGGGTACGCATGGCGACCTCCTTGAGCTCCACATCCTCACCCAGCTTCTTGTTGCGGGCG 85410 Query 14006 TGGACACCCAAAATCTTCTCGCGACCGCGCACACTG----GGTAGGGACACGGTGATCTT 14061 ||||| | |||| | ||| || ||| ||| || ||| |||| || || Sbjct 85411 TGGACCTTGAGGATCTCCCAGCGGCC-CGC---CTGGTCAGGCAGGTCGACGGAGACCTG 85466 Query 14062 ACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGC 14121 ||||| ||||| || ||||| || |||||| ||| ||||| ||| ||||| || || Sbjct 85467 GCGATCGAAGCGGCCCGGGCGCAGCAGGGCGGGGTCTAGGATGTCAGCACGGTTGGTGGC 85526 Query 14122 CGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATT 14181 || ||||||| ||| || || | | || ||||| |||||||| || | || || || Sbjct 85527 GGCAATGACAATGATACCGGTGTTGCCCTCGAAGCCGTCCATCTCCGTGAGCAGCTGGTT 85586 Query 14182 GATGGTTTGTTCGCGTTCATCATT 14205 | || || || || || || || Sbjct 85587 CAGCGTCTGCTCACGCTCGTCGTT 85610 >seq1341 Length=23566 Score = 118 bits (130), Expect = 1e-21 Identities = 180/254 (71%), Gaps = 7/254 (3%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||| | ||||||||||| |||||||| || || |||||| || || Sbjct 13793 GGCAAAGTCGCAGTGCATGCCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGCCC 13852 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || |||||||| | |||||| || | || || ||||| ||||||||| Sbjct 13853 GGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGCTGAAGAAGAT 13912 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA-GCG-GGACTTTGTATCA 130192 ||||| || ||| ||||| | || ||||| || ||| | || | | || Sbjct 13913 GCCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAAGCACTCGTTGCCGGTG----- 13967 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | |||||| | ||||||||||||||| || ||| || |||| ||| | ||| | | Sbjct 13968 ATCCACTTGAGCGCCCACTGCGCCTTGCGCTTGATGCAGGGGATGGTGTCGATGGAGTGG 14027 Query 130253 AAGAGTTCCTTCTT 130266 ||||| | ||||| Sbjct 14028 AAGAGCTTATTCTT 14041 >seq135 Length=196152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 119115 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 119174 || ||||||| ||| ||| | || |||||||| || |||| |||||||||||| || Sbjct 154343 CGTAACTCCACAAACTCCCACACGTCGGCGTGCCATGGCTCCAAGTACACCGCGATCGAG 154284 Query 119175 CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 ||||| || || | ||||| ||||| || || |||| || || ||||| Sbjct 154283 CCCTTGCGCTTGCCCGATTGGTTGCAATACCGTGCGGTCTCGTTGAACACCTTGAGCATG 154224 Query 119235 GGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACA 119294 || | ||| || ||||| |||| || || | | || || || ||||| | || Sbjct 154223 GGCACGATGCCGTCGGACCGGCCGTTGGTGCTCATGATGCGCGAGCCCTTGGCACGGATG 154164 Query 119295 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 119346 | | || ||||| ||| || || || |||||||| |||| |||||||||| Sbjct 154163 TTGCTGACGTGCACACCGATGCCGCCAGCCCACTTGGAGA--TGCGCGCACT 154114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618403489735120