Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1341 120 4e-22 seq135 84.2 3e-11 >seq1341 Length=23566 Score = 120 bits (132), Expect = 4e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || | || |||||| |||||||| ||||||||| || || || Sbjct 13952 CTTCGCCGAGCGCCTGGTGGCGTTTGCGGCGGTTGAGGGCATCTTCTTCAGCGGCTCGTT 13893 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | || | |||||||||||||| || |||||||| || || |||||||||||| Sbjct 13892 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTTACCTTCTCCAACGA 13833 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| ||||| ||||||||||| | ||| || ||||| Sbjct 13832 GCTCATCTCGCGTGACGAGGGCATGCACTGCGACTTTGC 13794 >seq135 Length=196152 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 127749 CCTCCCCTGAAACCATAGACTGGAACTCCGCCTGTTCGAGAGCGAGGTCCCCCTTCACTT 127808 |||| ||||| || | ||||||||| || || || | ||||||||||| | || Sbjct 39326 CCTCTCCTGACACGACGCTCTGGAACTCGGCTTGCTCCATCTGCAGGTCCCCCTTGATTT 39267 Query 127809 CTGGTGCGATGAACATGAAGGAATCCTTGATCGCCGAGAGACCGAACTTCTTCTCGATGT 127868 |||| |||| ||||| || || ||||||||| || |||||||| |||||||| Sbjct 39266 CTGGGGCGACGAACAGGAGCTTCTCTGCGATCGCCGACAGGCCGAACTTGCGCTCGATGT 39207 Query 127869 TGTTTGAAAGGGTGCCAACGTCTTCG 127894 |||| || ||| || ||||||||| Sbjct 39206 TGTTAGAGAGGACACCCACGTCTTCG 39181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583230893302480