Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 116 1e-20 seq12 105 2e-17 seq238 104 7e-17 seq282 91.5 4e-13 seq1300 87.8 5e-12 seq272 87.8 5e-12 seq1289 86.0 2e-11 seq83 84.2 7e-11 >seq5 Length=471533 Score = 116 bits (128), Expect = 1e-20 Identities = 222/328 (68%), Gaps = 23/328 (7%) Strand=Plus/Minus Query 177751 ATAAGCTAGCCCGCCCATACCAGACATAATTCTGAGGACATTGTAGTTGGTGGCGTATAC 177810 |||||||| || ||||| || ||||| | || |||||||| |||||| ||||| || Sbjct 218172 ATAAGCTAAGCCCCCCATGCCCGACATCACTCGCAGGACATTATAGTTGACTGCGTAGAC 218113 Query 177811 GCGGACCTTG-----------------GCAGT----GTTGGTACCGCCAACGGTAGCATT 177849 |||||||||| | ||| | |||| | ||||| || Sbjct 218112 GCGGACCTTGCACGTCCTGCTCTGCGTGGAGTTGTTGATGGTCTTGTTGACGGTGTTGTT 218053 Query 177850 GGAAAGAACAAGCTGGAGTGTAGCATTGTCAATGCGTGAGAAATTGCAGGTTCCTGATGG 177909 || || || | ||| || ||||| || ||||| || | ||||| ||||| || Sbjct 218052 GGTGAGCCAGAGGTTGAGGGTCGCATTATCGATGCGCGACATGTTGCATGTTCCGCTGGG 217993 Query 177910 CTGGTGCTCCTCGGGCCGAAGGGCGAAGGAGTAGAGATTGATACCAGTGTCAGGGGATCG 177969 |||||| ||||||||| || ||||| ||||||| ||| || || |||||| Sbjct 217992 CTGGTGTTCCTCGGGCTTGAGCGCGAACGAGTAGACGCAGATGCCCTTGG-AGGGGACGT 217934 Query 177970 GGT-GTGGTGCTGGTAGGGCTGAACAAGGTCGAAGTATGTACCCTCACGCTCTGAGAAGC 178028 | |||||| ||||||||||| || |||| |||||| || || ||||| ||||||| Sbjct 217933 TCTCGTGGTGTTGGTAGGGCTGCACGAGGTTGAAGTAGCGTCCGTCGCGCTCGGAGAAGC 217874 Query 178029 GGTCCTGACCATTAAGCTGAAGTTTGGC 178056 |||| || ||||| ||||| || || || Sbjct 217873 GGTCGTGGCCATTGAGCTGTAGCTTCGC 217846 Score = 96.9 bits (106), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 179336 CCGAAATCAGCCTGGCCGTTGAAAGTTTGTTCAATAGATTCCATAGCAAAATTTGTGTAG 179395 || ||||| ||| ||| ||||| || || || || || ||||| | || || || | | Sbjct 216926 CCAAAATCCGCCGAGCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGG 216867 Query 179396 CGACGGTAGGTAACCTTCCAAAAAGTAATCTGTGGATTACCTGTAAGGTAAACATCTTGA 179455 || |||||| ||||| |||| || ||||| || || || | ||||||| || || Sbjct 216866 CGGCGGTAGACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGC 216807 Query 179456 GCGCCATAGGCGACGAGTTGCATTAAGCCTCCTCCCAT 179493 |||||||||||||| || ||||| | ||| || ||||| Sbjct 216806 GCGCCATAGGCGACCAGCTGCATAAGGCCACCGCCCAT 216769 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 178559 GACTCATCGCCAGTGAACTGGAGCTGCTCAATAAGGTACTCGTGGGGATTCTGAGCCATA 178618 ||||| |||||||||||||| |||||||| || ||||||||||| | ||| || | Sbjct 217565 GACTCGTCGCCAGTGAACTGCAGCTGCTCGATGAGGTACTCGTGCGAGACCTGCGCGAAG 217506 Query 178619 CGGCGGCGTTCATCAGTGTCAAGGAAAACATAGTCAACATAGAGTGATGC 178668 ||||| | || || ||||||||| | | ||||| ||| |||| ||||| Sbjct 217505 CGGCGTCTCTCGTCGGTGTCAAGGTAGATGTAGTCGACAAAGAGGGATGC 217456 >seq12 Length=425388 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || || |||| | || || ||||| || | Sbjct 400406 CAAG-TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCCA 400464 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||| || || ||||| || || || || || || || ||||| | Sbjct 400465 GCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGA 400524 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || ||||| | ||||| | ||||| ||||| || | ||||| | Sbjct 400525 TCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCTTGC 400584 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || |||||||||||||| Sbjct 400585 CAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 105 bits (116), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || |||||||| || || || || || |||| | || || ||||| || | Sbjct 400862 CAAG-TGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCCA 400920 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||| ||||| ||||| || || || || || || || || || | Sbjct 400921 GCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGGA 400980 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || ||||| | ||||| | || || ||||| || | ||||| | Sbjct 400981 TCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGC 401040 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || |||||||||||||| Sbjct 401041 CAGTCAGGGTCTTGACAAAAATCTGCAT 401068 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || ||||||| | || || ||||| || | Sbjct 401090 CAAG-TGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATCCTCCA 401148 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||| || || ||||| || || ||||| || || || ||||| | Sbjct 401149 GCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGA 401208 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || | ||||| | || || ||||| || | ||||| | Sbjct 401209 TCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCTTGC 401268 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||||||||| Sbjct 401269 CAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 96.9 bits (106), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || || || ||||| || || || || || |||| | || || ||||| || | Sbjct 400634 CAAG-TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTCCA 400692 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||| || || ||||| || || || || || || || ||||| | Sbjct 400693 GCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGA 400752 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || ||||| | ||||| | || || ||||| || | ||||| | Sbjct 400753 TCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCTTGC 400812 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || ||||||||||| Sbjct 400813 CAGTCAGGGTCTTGACGAAAATCTGCAT 400840 >seq238 Length=145596 Score = 104 bits (114), Expect = 7e-17 Identities = 219/326 (67%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| | ||||| || || | || | || || | | || || || ||| Sbjct 132801 AAGATGAAGGAGACCGCTGAGGCGTACCTGGGCAAGACTGTCAAGCACGCCGTCATCACT 132860 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || || ||||| || ||||| || ||||| | ||| | Sbjct 132861 GTGCCTGCCTACTTCAACGACGCTCAGCGCCAGGCCACAAAGGACGCTGGTACGATTTCT 132920 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || ||| | | |||| || || || ||||| |||||||||||||| || ||| Sbjct 132921 GGCCTGAACGTTGTGCGCGTGATCAACGAGCCTACTGCGGCAGCAATTGCATACGGCCTT 132980 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | | ||| | || || || || ||| | ||||| | ||||| || ||||| Sbjct 132981 GACAAGAAGGGTGGC---GAGAAGAACATCCTTGTGTTTGACCTGGGTGGCGGCACTTTC 133037 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || | || || |||| | || | ||||| || | || | ||||| Sbjct 133038 GATGTGTCCATCCTCACCATTGACAACGGTGTGTTTGAGGTCGTGTCCACGTCGGGTGAC 133097 Query 349862 ACACATCTTGGTGGAGAAGATTTTGA 349887 || || || ||||| || || || || Sbjct 133098 ACCCACCTGGGTGGTGAGGACTTCGA 133123 >seq282 Length=131332 Score = 91.5 bits (100), Expect = 4e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||||||||||| ||| ||||| ||||||| ||||||| |||||| ||| Sbjct 130411 GGGGTTGTAGCTCAATTGGTAGAGCGCGCGCTTCGCATGCGTGAGGTACGGGGATCGAAA 130470 Query 235950 CCCAGCATCTCCATA 235964 ||| ||| ||||||| Sbjct 130471 CCCTGCAACTCCATA 130485 Score = 91.5 bits (100), Expect = 4e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| |||||||||||| ||| ||||| ||||||| ||||||| |||||| ||| Sbjct 131081 GGGGTTGTAGCTCAATTGGTAGAGCGCGCGCTTCGCATGCGTGAGGTACGGGGATCGAAA 131022 Query 235950 CCCAGCATCTCCATA 235964 ||| ||| ||||||| Sbjct 131021 CCCTGCAACTCCATA 131007 >seq1300 Length=24795 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||||| |||||| ||| ||||||||||||| ||||||| |||||| ||| Sbjct 174 GGGGCTGTAGCTCAATCGGTAGAGCGCGCGCTTTGCATGCGTGAGGTACGGGGATCGAAA 233 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 234 CCCTGCAGCTCCA 246 >seq272 Length=133296 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||||| |||||| ||| ||||||||||||| ||||||| |||||| ||| Sbjct 133137 GGGGCTGTAGCTCAATCGGTAGAGCGCGCGCTTTGCATGCGTGAGGTACGGGGATCGAAA 133078 Query 235950 CCCAGCATCTCCA 235962 ||| ||| ||||| Sbjct 133077 CCCTGCAGCTCCA 133065 >seq1289 Length=25432 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 423963 TGCTCCGTTAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAATGTCACTGGTTCGA 424022 |||| | ||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 324 TGCTTCCTTAGCTCAGTTGGTTAGAGCGTGCGGCTGTTAACCGCAAGGTCGGCGGTTCGA 383 Query 424023 TCCCAGTACGGAGCG 424037 | || || | |||| Sbjct 384 TTCCGCTAGGTAGCG 398 >seq83 Length=234864 Score = 84.2 bits (92), Expect = 7e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || | || | ||||||||||| || ||||| | Sbjct 62882 TTTGCATACCGCCACGCAGGCGAAGCACCAAGTGCAACGTAGACTCTTTCTGGATATTGT 62823 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| | || || || |||||||| || || || ||||||||||| || ||||| | Sbjct 62822 AGTCAGCAAGGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATTAGGCGCTGCTGGT 62763 Query 140623 CAGGAGGAATTCCT 140636 | ||||| || ||| Sbjct 62762 CCGGAGGGATGCCT 62749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515174762963906