Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq5 102 4e-17 >seq5 Length=471533 Score = 102 bits (112), Expect = 4e-17 Identities = 389/604 (64%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 14551 TCTGCCTTGTACCAAAACACTTGGTCTTGTAATTTGTTGGATTTTACGTTGTTATTAATG 14610 || |||||||||||||| || ||||| | | ||| || ||||||| |||||| Sbjct 245882 TCGGCCTTGTACCAAAAGACCTGGTCCTCGAGCCGATTGCTCTTGGCGTTGTTGTTAATG 245941 Query 14611 ACTAAACACTCATAATTCTCAGTGCATTGGTCCATCACCTGGGCAAAAGATTCAT--ATG 14668 || | ||||| || || || ||||||||| | | | |||||| | ||| | | Sbjct 245942 ACAAGGCACTCGTAGTTTTCGGTGCATTGGGTGAGGGTC-GAGCAAAACA--CATGGAAG 245998 Query 14669 T-TGGAAACATACCTGCATAATTCTCATAAATTCTTTTGCGGTTTGCAATATAATTGTCT 14727 | || ||||| ||||| || || ||||| || | |||||||| | | | ||| || Sbjct 245999 TCGGGGAACATGCCTGCGTAGTTTTCATAGATGCGCTTGCGGTTCGAGACAAGATTCTCG 246058 Query 14728 CGAAGTATAAAAACGTAATCTATATTGGTGCGGAGAGTAGGAGGTACGCCTAAAGGATAT 14787 || || || || |||||||| || ||||| ||||| | || || || || | || || Sbjct 246059 CGTAGGATGAATACGTAATCGATGTTGGTTCGGAGCGATGGTGGCACTCCCAGGGGGTAC 246118 Query 14788 TGCATAGTTACGATTAAAATTACCTTCCAGTGACGTCCATTTaaaaaaaGTAATCGCATT 14847 ||||| || | || || || | || | || || || || | || || | || Sbjct 246119 TGCATGGTGATGACGAACATCATGTTGTAATGGCGGCCGTTCATGAAGAGCAGCTTGATG 246178 Query 14848 ATTTTATCTCTAGACCAAGTGTTGTCATACAAGCAGTCATCCATAATGACAAAAGTGCGT 14907 | || || | ||||| | || ||||||| ||| || || | |||| || | ||| Sbjct 246179 TTCTTGTCACGCGACCAGGCGTCATCATACAGGCAATCGTCGAGGATGAGGAAGGAGCGG 246238 Query 14908 GGGTCGATATTGGAttttttataagtttccatttcttttttgatttgtttCAATACAGAA 14967 |||||||| | | || || || || | || |||||| | ||| | || | Sbjct 246239 GGGTCGATTTGGCATGAACCGTACGTCTCGACCTCGCGGTTGATTCGGTTC--TTGAGCA 246296 Query 14968 --CGCTGACGTTTCAATATATTTTCAATAATGGCGGTATTGTATTCATTGTGAATGAATA 15025 ||| ||||| | | || || | | || | |||| || | ||| ||||| | Sbjct 246297 TTTTCTGTCGTTTGATGACGTTGTCCACCACGGGTGGGGTGTACTCGTCGTGGATGAAGA 246356 Query 15026 GTTTAGGAACCATTTTGCCATAAAATCCATTACCTTCTTCTGTGCCTGAGATGACAGTTC 15085 |||||||| || ||||| || | || || || || | |||||||| |||| Sbjct 246357 TGCCTGGAACCATGTTTCCATAGAAGCGGTTTGCTGACTCGGTCGCGGAGATGACGGTTC 246416 Query 15086 CAATGGGGATATCTTGATGATAATACAATAAATCTCTCACTAAAAACGATTTACCTGTGT 15145 | || |||||||| | || || |||| | || | ||| | || || || || |||| Sbjct 246417 CTATTGGGATATCACGGTGGTAGTACAGGAGGTCGCGCACGAGGAAAGACTTGCCAGTGT 246476 Query 15146 CTCG 15149 | || Sbjct 246477 CGCG 246480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235668217620300