Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq135 168 7e-37 seq2 127 2e-24 seq5 109 6e-19 seq282 95.1 1e-14 seq3987 89.7 6e-13 seq3985 89.7 6e-13 seq1341 86.0 7e-12 >seq135 Length=196152 Score = 168 bits (186), Expect = 7e-37 Identities = 333/487 (68%), Gaps = 8/487 (2%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 ||||||||||||| || || || || ||||| || ||| ||| ||||||||| Sbjct 153997 TTTACGCACGCCAGCCCGACGCTCTTTAACGCAGGCACGCGGCACGAGCAGATGTCGTCG 154056 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||| ||| ||| | | | || | ||||| || |||| | | || | || Sbjct 154057 TGCTTTCTGCTGGGCACGCACGACAGC---ATCGATGGTATCTTCAAAACCATATCCGAC 154113 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCG 53452 |||| | ||||||||||||| | || || |||||| | ||| | ||| ||||||| Sbjct 154114 AGTGCGCGCATCTCCAAGTGGGCTGGCGGCATCGGTGTGCACGTCAGCAACATCCGTGCC 154173 Query 53453 AACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGC 53512 || ||| | | |||| | | || |||||| |||| || |||||||| |||||| Sbjct 154174 AAGGGCTCGCGCATCATGAGCACCAACGGCCGGTCCGACGGCATCGTGCCCATGCTCAAG 154233 Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 || |||||| | || || ||||| |||||| | | || ||||||||||| ||| || Sbjct 154234 GTGTTCAACGAGACCGCACGGTATTGCAACCA--ATCG-GGCAAGCGCAAGGGCTCGATC 154290 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAAT 53632 || | ||| | ||||| |||||||||||| | ||||||| | ||| | || | ||| Sbjct 154291 GCGGTGTACTTGGAGCCATGGCACGCCGACGTGTGGGAGTTTGTGGAGTTACGACAGAAC 154350 Query 53633 CAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTC 53692 || | ||| | ||| || ||||| || || |||||| | || ||| Sbjct 154351 ACAGGCGCCGAGACGGAGCGGACGCGCGACCTCTTCCTGGCACTGTGGGTGCCCGACGAG 154410 Query 53693 TTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGT-GCCCGAACGAGTGCCC 53751 ||||||| ||| | | |||||||| |||| ||| |||| |||||| || ||||| Sbjct 154411 TTCATGCGCCGCGTGCATGACGACGAGGACTGGTTCCTCATGTCGCCCGACCG-CTGCCC 154469 Query 53752 CGGCCTC 53758 |||||| Sbjct 154470 AGGCCTC 154476 >seq2 Length=533353 Score = 127 bits (140), Expect = 2e-24 Identities = 145/191 (76%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 53349 TGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCA 53408 || || | ||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 429209 TGCAGAACGACTCGATCGACGGCATCTACGACACGCTCAAGGAGTGCGCCGTCATCTCCA 429150 Query 53409 AGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAAT 53466 |||| | || || ||||| | ||| |||| | ||| |||| || | ||| | || Sbjct 429149 AGTGCGCTGGCGGCATCGGCCTGTCC-CTGCAC-AACATCCGCGCCACGGGCTCGTACAT 429092 Query 53467 CAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACAC 53526 | || || |||||| | || | || ||| | || ||||| |||||||||||| |||| Sbjct 429091 CCGCGGCACCAACGGCACCTCCAACGGCATCATCCCCATGCTGCGCGTCTTCAACGACAC 429032 Query 53527 GGCCCGGTACG 53537 ||| |||||| Sbjct 429031 CGCCAGGTACG 429021 Score = 107 bits (118), Expect = 2e-18 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 53532 GGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGT 53591 ||||||| ||||||| || || ||||||||||| |||||||||| ||| | ||||| | Sbjct 428781 GGTACGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATGTACATTGAGCCCT 428722 Query 53592 GGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGC 53651 ||||| | ||| | | || || ||||| ||||| ||| || || | || ||| || Sbjct 428721 GGCACTCTGACGTGTTTGACTTCCTCGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGC 428662 Query 53652 GCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || || ||||| || ||| || |||||||| || ||||| |||||| Sbjct 428661 GCGCGCGCGACCTCTTCTAC-GCGCTGTGGATCCCCGACCTATTCATG 428615 Score = 102 bits (112), Expect = 9e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 || |||| | | ||| |||||| |||||||| ||| | ||| | |||||| Sbjct 425521 CTAAAGGCGCTCTACAAGACGGTCTGGGAGATCAAGCAGCGCACGCTGGTGGACATGGCG 425462 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || || || ||||||||||||||| |||||| | ||| | |||||| || || Sbjct 425461 GCGGACCGCGGCGCGTACATCGACCAGAGCCAGTCGTTCAACGTGTTCATG-AGCGACCC 425403 Query 55847 TCACTG-GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 ||| | |||| | | |||| |||||||||||| |||| ||||| |||||||| || Sbjct 425402 CAACTTCGGCAAGCTCACCTCGCTGCACTTTTACGCGTGGCGCAAGGGCCTCAAGACCGG 425343 Query 55906 TATGTACTATCTGCGGAC 55923 |||||||| ||||| || Sbjct 425342 CATGTACTACCTGCGCAC 425325 >seq5 Length=471533 Score = 109 bits (120), Expect = 6e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 84143 GCGGAGCCGTTCACGGTCTGCTGGATGTTCTCCATGGCGAAGTTGGTGTGGCGCTTGTAC 84202 || ||||| || | ||||||| |||| |||||||| ||||||||| ||||| ||| Sbjct 216917 GCCGAGCCATTGAACGTCTGCTCGATGGACTCCATGGTGAAGTTGGTATGGCGGCGGTAG 216858 Query 84203 ACGGCCTGGAAAAAGGTAACCTTGGGCTGCCCAGTCAGGTATACATCCTGCGCACCGTAC 84262 || ||| ||||||||| | || || | || | |||||| | |||||||| || || Sbjct 216857 ACCACCTTGAAAAAGGTGATCTGCGGGTTGCCGGACAGGTAAATGTCCTGCGCGCCATAG 216798 Query 84263 GCGACGAGCTGCATAAGTCCACCTGCCATT 84292 ||||| ||||||||||| ||||| ||||| Sbjct 216797 GCGACCAGCTGCATAAGGCCACCGCCCATT 216768 Score = 98.7 bits (108), Expect = 1e-15 Identities = 312/475 (66%), Gaps = 9/475 (2%) Strand=Plus/Minus Query 152694 CGCCTTGATGACGGGTGTGACCATTGAAACAACGAACCCG---AGCTCGATCAGCTTCGG 152750 |||||||| || ||| || | ||| || | ||||||| ||| | ||| || Sbjct 300760 CGCCTTGACGATGGGCGTAAGCATGGAGGTCAGGAACCCGGGAAGCCGCACCAGGGAGGG 300701 Query 152751 CCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGC 152810 ||| | | ||||||| ||| | |||| ||| |||||||| ||||| || || Sbjct 300700 CCATTGCCGCTGGAACAGGTTCATCACCAGGCCTTTGATGTGGCTGCCGTCTGCGTCGGC 300641 Query 152811 GTCGGTCATGATCATCAGACGACCGTAGCGCAGGTCA-CGTAGTGACCCGTAGACCTTTC 152869 |||||||||||||| | || |||||||||||||| || | || ||| ||| | Sbjct 300640 ATCGGTCATGATCATGATGCGCCCGTAGCGCAGGTCCGCGGCG-GAGGTGTACACCCGGC 300582 Query 152870 CATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTT 152929 | | ||||| | ||| ||||| | | || |||| || || | | | | Sbjct 300581 CCGACTCCAGCCCCATGATGCGCTTGAGATCCGCAATCTCCTTGTTGTCCGCGATC-GAC 300523 Query 152930 TCACCG-TGGCATCCCGAACATTGCGCGGCTTTCCC-CGGAGTGGAAACACGCCGAACGC 152987 || || | | | | || || | | ||| || || || || |||||||||||| | Sbjct 300522 TCTGCGCTCTCGCCACACACGTT-CATGATTTTGCCACGCAGCGGGAACACGCCGAACAC 300464 Query 152988 GTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGT 153047 || ||| || || | ||| || | || || | || || || ||||| |||||||| Sbjct 300463 GTCGCGTCCCACCTGGTCCAGCCCAGAGATCGCCATGGACTTTGCGGAGTCGCCCTCGGT 300404 Query 153048 GATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTT 153107 || ||||| || ||| || || || |||||||||||||| ||||| ||||| Sbjct 300403 GAGGATAAGGGTGCAGAGTTGGCTGCGCGCTGTGCCGGCCCAGTTGGCATCGTCCAGCTT 300344 Query 153108 GGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTTTCTTCAGTTCCTTG 153162 ||| || || |||||| |||||| ||| || || ||||| |||| |||| Sbjct 300343 GGGAATGCCGGTGATCGTGCTTTGCTTGCGTCCATCCGTTTTGCGCAGTGACTTG 300289 >seq282 Length=131332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 117410 TGAGCCAAGTTGACAATCGTACCTTGG--AGGCTCGCCTCACCATGGTGATACGCCGTCT 117467 || |||| |||||| || || ||| | |||| ||| || ||||| || |||| | Sbjct 51809 TGTGCCAGGTTGACGATGGTGG--TGGCCAAGCTCTGCTCGCCGTGGTGGTAGGCCGAGT 51866 Query 117468 GCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGA 117527 |||||| |||||| | |||||||| || ||||| ||||| | | ||||| ||||| Sbjct 51867 GCTCCGACACGTACGCGGCCAGCTGCGCGACCTTGATGTCCTTCTTGAGGTTGCGCTTGA 51926 Query 117528 GGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCG 117587 | |||| || | | ||||||||||| ||||| || || ||| |||| ||||| | Sbjct 51927 AGGAGGCGTACAGGATCTTGCGCTGACCCGGCTTGAGGCCGTCCATCACGCTGGGGATGG 51986 Query 117588 AACGCTTGATGTC 117600 | |||| || ||| Sbjct 51987 AGCGCTCGAGGTC 51999 >seq3987 Length=1143 Score = 89.7 bits (98), Expect = 6e-13 Identities = 223/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Plus Query 168124 GGAAAAGCGTCAGTTTGTCCGAGCGTGTCCAGGCGACGATTGCCGCGGTTTTCTGAGCAG 168183 |||||| || ||||||| || ||||| | | ||| ||||| || ||| |||||| Sbjct 423 GGAAAAACGCGAGTTTGTACGCCGTTGTCCCGCTGGCGACTGCCGTGGCTTTTTGAGCAC 482 Query 168184 CGCGTGGAAGTGTGGTGTATGCGACAACTGGTCGTGTCCGGAATGCCACGAGATCAAGGG 168243 ||| | ||||||||| | |||| | ||| | || ||| ||||||||| || || Sbjct 483 CGCATACAAGTGTGGTATTTGCGCGACATGGACATGCCCGAGTTGCCACGAGCCGAAAGG 542 Query 168244 GAAGGACAAGGAGGCCCCGCATACCTGCGACCCTAATAGCGTCGAGACGGCCAAGCTCCT 168303 ||||| || || || || || ||| | || | | ||| ||||||| ||||| | Sbjct 543 ACTTGACAACGATGCACCACACACTTGCAAGCCGGAGAACGTGGAGACGGTCAAGCAATT 602 Query 168304 TGCCAGGGATTCACGCAAC---TGCCCGAAGTGCGCCTCGATGATTTTCAAAATCGACGG 168360 |||| || ||| ||| ||||| |||||||| | ||| | || |||| Sbjct 603 GGCCAAAGA--CAC-CAAGGCGTGCCCCAAGTGCGCTGTGCCAATTCACCGTATTCACGG 659 Query 168361 TTGCGATCAAATGTTCTGTACACAGTGTCACACCGCGTTCAGTTGGCGGACGGGACGGGT 168420 ||||| |||||||| || || || ||||| || ||| |||| ||| | | | Sbjct 660 TTGCGCACAAATGTTTTGCACCTGCTGCCACACGGCTTTCGATTGGAACACGCTAAAGAT 719 Query 168421 CGA---GACGGGCACCATTCACAACCCGCACTACT 168452 || ||| || | || || ||||||||||||| Sbjct 720 AGATTTGACCGGTAGGATCCATAACCCGCACTACT 754 >seq3985 Length=1144 Score = 89.7 bits (98), Expect = 6e-13 Identities = 223/335 (67%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 168124 GGAAAAGCGTCAGTTTGTCCGAGCGTGTCCAGGCGACGATTGCCGCGGTTTTCTGAGCAG 168183 |||||| || ||||||| || ||||| | | ||| ||||| || ||| |||||| Sbjct 721 GGAAAAACGCGAGTTTGTACGCCGTTGTCCCGCTGGCGACTGCCGTGGCTTTTTGAGCAC 662 Query 168184 CGCGTGGAAGTGTGGTGTATGCGACAACTGGTCGTGTCCGGAATGCCACGAGATCAAGGG 168243 ||| | ||||||||| | |||| | ||| | || ||| ||||||||| || || Sbjct 661 CGCATACAAGTGTGGTATTTGCGCGACATGGACATGCCCGAGTTGCCACGAGCCGAAAGG 602 Query 168244 GAAGGACAAGGAGGCCCCGCATACCTGCGACCCTAATAGCGTCGAGACGGCCAAGCTCCT 168303 ||||| || || || || || ||| | || | | ||| ||||||| ||||| | Sbjct 601 ACTTGACAACGATGCACCACACACTTGCAAGCCGGAGAACGTGGAGACGGTCAAGCAATT 542 Query 168304 TGCCAGGGATTCACGCAAC---TGCCCGAAGTGCGCCTCGATGATTTTCAAAATCGACGG 168360 |||| || ||| ||| ||||| |||||||| | ||| | || |||| Sbjct 541 GGCCAAAGA--CAC-CAAGGCGTGCCCCAAGTGCGCTGTGCCAATTCACCGTATTCACGG 485 Query 168361 TTGCGATCAAATGTTCTGTACACAGTGTCACACCGCGTTCAGTTGGCGGACGGGACGGGT 168420 ||||| |||||||| || || || ||||| || ||| |||| ||| | | | Sbjct 484 TTGCGCACAAATGTTTTGCACCTGCTGCCACACGGCTTTCGATTGGAACACGCTAAAGAT 425 Query 168421 CGA---GACGGGCACCATTCACAACCCGCACTACT 168452 || ||| || | || || ||||||||||||| Sbjct 424 AGATTTGACCGGTAGGATCCATAACCCGCACTACT 390 >seq1341 Length=23566 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || || | ||| || ||||| || || |||||||| | ||| ||||||| ||| Sbjct 13833 TCGTTGGAGAAGGTAAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAG 13892 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || || || |||||||||||||| || || |||||| || || ||||| | ||||| Sbjct 13893 AACGAGCCGCTGAAGAAGATGCCCTCAACCGCCGCAAACGCCACCAGGCGCTCGGCGAAG 13952 Query 74910 GGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGAC 74968 | | | || ||||| | | ||||| | || || || |||| ||| |||| Sbjct 13953 CACTCGTTGCCGGTGATCCACTTGAGCGCCCACTGCGCCTTGCGCTTGA-TGCAGGGGAT 14011 Query 74969 AGTATCGATCGCTTGGAAGAG 74989 || ||||| | |||||||| Sbjct 14012 GGTGTCGATGGAGTGGAAGAG 14032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547187941499600