Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 105 4e-18 seq879 87.8 1e-12 >seq12 Length=425388 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||||| |||||| || || || |||||| || ||||| || || | Sbjct 400841 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 400900 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || |||||||| || | |||||| ||||| || || Sbjct 400901 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 400960 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| |||||| || || ||| | ||| ||||| ||| | Sbjct 400961 GATACCCTCCTTGTCTTGGATCTTCTG-CTTGACGTTGTCAATGGTGTCAGACGACTCGA 401019 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || || || | || || ||||||||||||||| Sbjct 401020 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 401069 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||||| |||||| || || ||| |||||| || ||||| || || | Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || ||||| || | ||||| ||||| || || Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || ||| | ||| ||||| ||| || Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTGTCAATGGTGTCAGACGACTCAAC 400564 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| || || || || || | || || ||||||||||||||| Sbjct 400565 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 400613 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||||| |||||| || || ||| |||||| || ||||| || || | Sbjct 400613 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 400672 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || ||||| || | ||||| ||||| || || Sbjct 400673 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGG 400732 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | ||| ||||| ||| | Sbjct 400733 GATACCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTGTCAATGGTGTCAGACGACTCGA 400791 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || || || | || || || |||||||||||| Sbjct 400792 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 400841 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || || ||| |||||| || ||||| ||||| | || || || Sbjct 401079 AGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGG 401138 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| ||||| || || | |||||| Sbjct 401139 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCC 401198 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| || || ||| | || ||||| ||| || || | || Sbjct 401199 TTGTCCTGGATCTTCTG-CTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGT 401257 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || |||||||||||| Sbjct 401258 GATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||||| |||||| || || ||| |||||| || ||||| || || | Sbjct 401765 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 401824 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | || || || || || || ||||| || | ||||| ||||| || || Sbjct 401825 CAGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGG 401884 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| | Sbjct 401885 GATACCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTGTCGATGGTGTCAGACGACTCGA 401943 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || || || || || | || || ||||| ||||||||| Sbjct 401944 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 401993 >seq879 Length=48288 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| ||||| || || || |||||| |||||||| || || | Sbjct 4035 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGC 3976 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || ||||| || || | |||||| |||||||| || Sbjct 3975 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 3916 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| ||| | Sbjct 3915 AATGCCCTCCTTGTCCTGGATCTTCTG-CTTGACGTTGTCGATGGTGTCAGAAGACTCAA 3857 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | || || ||||| || || | ||| || || || ||||||||| Sbjct 3856 CCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314713865683766