Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq3865 623 1e-173 seq292 82.4 9e-11 >seq3865 Length=1303 Score = 623 bits (690), Expect = 1e-173 Identities = 716/955 (75%), Gaps = 6/955 (1%) Strand=Plus/Plus Query 176149 TACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TT 176207 ||| | |||||||||||||| |||||||||| || | | || || || | ||| || Sbjct 316 TACATCGGTTGGTTTGGTGTAATCATGATTCCTTGCTTATTAACAGCAACATC-TGTATT 374 Query 176208 TATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGC 176267 ||| | || || ||||||| || || || || ||||||||||| || |||||||| | Sbjct 375 CATCATCGCTTTCGTTGCAGCTCCTCCAGTTGACATCGACGGTATCCGTGAACCAGTTTC 434 Query 176268 AGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGC 176327 || ||| || | || || ||||||||||| || || || || |||| | || ||||| Sbjct 435 TGGTTCTTTATTATACGGTAACAACATCATTTCTGGTGCTGTAATCCCTACTTCTAACGC 494 Query 176328 AATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 176387 || || |||||||||||||| | |||||||| ||| | | ||||| ||| | ||||| Sbjct 495 TATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAA 554 Query 176388 TGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCT-CAGCTTACATGG 176446 || || || |||||| | | || | ||||||| | | ||| | | | || ||||||| Sbjct 555 CGGTGGTCCTTACCAATTAATCGTTTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGG 613 Query 176447 GACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACT 176506 | || |||||||| | || | | |||| |||||||| |||||| ||| || |||| Sbjct 614 GTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACT 673 Query 176507 CTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTT 176566 |||||||||| | || || | ||||||||| | |||| || |||||||||| || | Sbjct 674 CTGCACCAGTTGCAGCTGCTACTGCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCAT 733 Query 176567 TCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAG 176626 ||||||| ||||||||| | || ||||| ||||| |||||||| ||| | |||||||||| Sbjct 734 TCTCTGACGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAG 793 Query 176627 CAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTG 176686 | || |||||||| || |||||||||||||| ||| | || || || ||||| ||||||| Sbjct 794 CTGAACACAACATCCTTATGCACCCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTG 853 Query 176687 GATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAA 176746 | ||| | ||||| ||||||||||| | | ||||| ||||| | | | || |||| Sbjct 854 GTTCTTTATTCTCTGCAATGCACGGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAA 913 Query 176747 CCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACA 176806 | |||||||||||| ||| |||||| ||||| ||||| ||||| |||||||||| Sbjct 914 CTGAAAACGAATCAGCTAACGCTGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACA 973 Query 176807 TTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACT 176866 | |||||||| |||||||||||||||||| | || ||||| || ||||| ||||| |||| Sbjct 974 TCGTAGCTGCTCACGGTTACTTTGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACT 1033 Query 176867 CAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAA 176926 | | | ||||||||| | || || | || || | | |||||||| ||||| Sbjct 1034 CTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTT 1093 Query 176927 TGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAG 176986 | ||| | | || ||||| ||||||||||||||||||||||||||||| || || | | Sbjct 1094 TAGGTTTATCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTG 1153 Query 176987 ACAACTC-TGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || ||| ||| || | || |||| || ||| | |||||||| ||| | ||| Sbjct 1154 AC-TCTCAAGGTCGTGTATTAAACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGT 1212 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||| |||||||| ||||| || ||||||||||| || ||| | ||| ||| Sbjct 1213 ATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCTCTAGACTTAGCTTCTG 1267 >seq292 Length=128933 Score = 82.4 bits (90), Expect = 9e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 176308 GTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACA 176367 || ||||||| || ||||| || || |||||||||||||| | |||||||| ||| | Sbjct 40789 GTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCATCT 40730 Query 176368 GTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATC 176427 | ||||||||| | ||||| | || || ||||| | || || | |||||| |||||| Sbjct 40729 TTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTT-CTTATC 40671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603463455824640