Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 125 6e-24 seq879 105 6e-18 >seq12 Length=425388 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || |||||| ||| || || || || || || || ||||| || | || || Sbjct 401783 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTGCGGCCATCCTC 401842 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || || ||||||||||||| ||| | | ||| |||||| Sbjct 401843 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 401902 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||||| |||| ||| | | | || || |||||| || || | |||||| | | Sbjct 401903 GATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCT 401961 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || |||||||| ||||| Sbjct 401962 TGCCAGTCAGGGTCTTGACAAAGATCTGCAT 401992 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || |||||| ||| || || || || || || || || || || | || || Sbjct 400403 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTC 400462 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || || ||||||||||||| ||| | | ||| |||||| Sbjct 400463 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 400522 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||||| |||| ||| | | | || || |||||| || || | ||||| | | Sbjct 400523 GATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCAACCTCAAGGGTGATGGTCT 400581 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || ||||| || ||||| Sbjct 400582 TGCCAGTCAGGGTCTTGACAAAAATCTGCAT 400612 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || |||||| ||| || || || || ||||| || || || || | || || Sbjct 401087 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTGCGGCCATCCTC 401146 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| Sbjct 401147 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTG 401206 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||||| |||| ||| | | | || || |||||| || || | |||||| | | Sbjct 401207 GATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGACGACTCGACCTCAAGCGTGATGGTCT 401265 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || || || ||||| Sbjct 401266 TGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || |||||| ||| || || || || || || || || || || | || || Sbjct 400631 CACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTC 400690 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||||||||| || || ||||||||||||| ||| | | ||| |||||| Sbjct 400691 CAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTG 400750 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||||| |||| ||| | | | || || |||||| || || | ||||| | | Sbjct 400751 GATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCT 400809 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || || || || ||||| Sbjct 400810 TGCCAGTCAGGGTCTTGACGAAAATCTGCAT 400840 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || || || || || || | || || Sbjct 400859 CACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCATCCTC 400918 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || |||||||||||||||| ||| | | ||| ||||| Sbjct 400919 CAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCTTG 400978 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| ||||| |||| ||| | | | || || |||||| || || | ||||| | | Sbjct 400979 GATCTTCTGCTTGA-CGTTGTCAATGGTGTCAGACGACTCGACCTCAAGGGTGATGGTCT 401037 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| || || ||||| || ||||| Sbjct 401038 TGCCAGTCAGGGTCTTGACAAAAATCTGCAT 401068 >seq879 Length=48288 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || ||||| ||| || || || || || || || || || || | Sbjct 4023 GCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTGCGGCC 3964 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || |||||||||||||| | ||| | || ||| || Sbjct 3963 ATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 3904 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||||| |||| ||| | | | || || ||||| || || | |||| Sbjct 3903 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGA 3845 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| || |||||||| || || ||||| ||||| Sbjct 3844 TGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 2723 GCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCC 2664 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || |||||||||||||| | ||| | || ||| || Sbjct 2663 ATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 2604 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||||| |||| ||| | | | || || ||||| || || | |||| Sbjct 2603 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGAGTGA 2545 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || ||||| || || |||||||| ||||| Sbjct 2544 TGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 2508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429524125673126