Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 141 2e-28 seq879 136 9e-27 seq83 100 7e-16 seq1700 98.7 2e-15 seq2866 86.0 1e-11 >seq12 Length=425388 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| || ||||| || || |||| |||||||| |||| || Sbjct 401076 CGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGCGTG 401135 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || || ||||| || || || ||||| || ||||| || Sbjct 401136 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCC 401195 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||| || ||||||||||| || | || || || | | Sbjct 401196 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGC 401255 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || || | ||| | ||||| Sbjct 401256 GTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 401296 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| || ||||| || || |||| ||||| || |||| || Sbjct 401772 CGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGTGTG 401831 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || || ||||| || || || |||||||| || ||||| Sbjct 401832 CGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGGATACCC 401891 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||| || ||||||||||| || | || || || | | Sbjct 401892 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCAAGC 401951 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 401952 GTGATGGTCTTGCCAGTCA 401970 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| || || || || || |||| ||||| || |||| || Sbjct 400848 CGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTG 400907 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || || ||||| || || || |||||||| || ||||| Sbjct 400908 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATACCC 400967 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||||| || || |||||||| || | || || || | Sbjct 400968 TCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCGACCTCAAGG 401027 Query 225673 GTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 401028 GTGATGGTCTTGCCAGTCA 401046 >seq879 Length=48288 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || ||||| || || || || || |||| ||||| ||||||| || Sbjct 2729 ACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 2670 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||| || || || || ||||| || ||||| || Sbjct 2669 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCC 2610 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||| || ||||||||||| || | || || || | Sbjct 2609 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAG 2550 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 2549 AGTGATGGTCTTGCCAGTCA 2530 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || ||||| || || || || || || | ||||| || |||| || Sbjct 4028 CGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCCAGGGTG 3969 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 3968 CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCC 3909 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||||| || ||||||||||| || | || || || | Sbjct 3908 TCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTCAACCTCAAGA 3849 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| |||| || || | ||| | ||||| Sbjct 3848 GTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 3808 >seq83 Length=234864 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||| ||||||||||||||||| |||||||| ||||||||||| |||| ||||| || Sbjct 62423 ACCCTCCTTGTCTTGGATCTTCTGCTTCACGTTGTCGATGGTGTCCGAGGACTCCACTTC 62364 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| |||||||| |||| || || | ||| | |||||| || Sbjct 62363 CAACGTGATAGTCTTGCCGGTCAGGGTCTTGACGAATATTTGCATGTT 62316 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 225609 ACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTC 225668 ||| |||||||| |||||||| |||||||| ||||||||||| |||| ||||| || Sbjct 62980 ACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCGATGGTGTCCGAGGACTCCACTTC 62921 Query 225669 TAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| |||||||| || | || || | || | |||||| Sbjct 62920 CAACGTGATGGTCTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 62876 >seq1700 Length=13672 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 7477 ATAGGTACTATATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATA 7536 || ||||||| || |||| |||| | | || ||||||| || ||| | | Sbjct 4669 ATTGGTACTAGCTTGAGTATGTTTATTCGATGGGAGTTAGCTGTCCCTGGTCGTGGTCTC 4728 Query 7537 TTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATT 7596 ||| |||||| |||| || ||||| ||||||||||| | || | || ||||| | Sbjct 4729 TTGGACGGTAATGGCCAGCTATACAATGTTATTATTACCGGTCACGGTATTATTATGTTG 4788 Query 7597 TTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATG 7656 || ||| | || ||||| | | | | || || || || ||||| | |||||| | ||| Sbjct 4789 TTGTTTATGGTCATGCCAGCTCTATTTGGGGGCTTTGGTAATTGGCTAGTTCCTATTATG 4848 Query 7657 ATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTA 7710 ||||| ||||| || ||||| || || | ||||| || || || ||||| ||| Sbjct 4849 ATTGGGGCTCCGGACATGGCCTTCCCCCGTCTTAATAACATTAGCTTTTGGTTA 4902 >seq2866 Length=2748 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/113 (79%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| ||||||||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 1102 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 1160 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 ||||| |||| || |||||||||||||| ||| ||| |||| ||||| Sbjct 1161 CAGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGA 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192468524286788