Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq3865 742 0.0 seq2255 495 5e-135 >seq3865 Length=1303 Score = 742 bits (822), Expect = 0.0 Identities = 764/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 ||||| || |||||||| ||| | ||||| | || | ||||||||||| | | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||||| | || ||||||| ||||| |||||| | || ||||| || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || ||||||||||| ||||| ||||| ||| |||| || | | || || ||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 183375 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCAT 183434 |||||| |||||||| || | ||| |||| ||||| ||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 183435 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGT 183494 |||||||| ||||| | || |||||| | || |||||||||||||||||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 183495 CTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCG 183554 | ||||||| | | || || | |||||||||||||||||| |||||||| |||| ||| Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCCG 638 Query 183555 TCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGC 183614 | | ||||||||||| |||||| ||| ||||| ||||| ||||| ||||| || || Sbjct 639 TTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 698 Query 183615 TGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTAT 183674 || ||| | |||| ||| ||||||||||||| || ||| |||||||| | ||||| Sbjct 699 AGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTAT 758 Query 183675 CAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 183734 ||| || || |||| ||| | || |||||||| || ||||||||||| |||||||| Sbjct 759 TTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACCC 818 Query 183735 CTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGG 183794 ||||||||| | ||||| |||||||| || ||||||||| | ||| |||||||||||| Sbjct 819 ATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACGG 878 Query 183795 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGG 183854 |||| | ||||| || || | | |||||||| ||||| || ||| ||| ||| Sbjct 879 TTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTGG 938 Query 183855 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGG 183914 |||| ||||||||||| ||||| || |||||||| || |||||||| || |||||||| Sbjct 939 TTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTGG 998 Query 183915 TCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGC 183974 |||| | || ||||| || ||||| || ||||| |||||||| | ||||||||| | || Sbjct 999 TCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAGC 1058 Query 183975 TGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGC-ACTATGGCATTTA 184033 ||||||||| || |||| |||||||| |||||| | ||| ||| | |||||||| || | Sbjct 1059 TGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGT-TTATCAACTATGGCTTTCA 1117 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 |||| || ||||| ||||||||||| || | |||| |||||||||||| | |||| Sbjct 1118 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACA 1177 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | ||||| ||| | ||||||||||| | || |||||||| |||||||| ||||| | Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 1237 Query 184154 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 | |||||||||||||| ||| | ||| ||| ||| Sbjct 1238 CGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 495 bits (548), Expect = 5e-135 Identities = 725/1020 (71%), Gaps = 8/1020 (1%) Strand=Plus/Plus Query 185958 TGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 186017 |||||||||| | || |||||| | | ||||| || || || || || ||||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 380 Query 186018 GGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACG 186077 |||||| | || || || |||||| | ||| | ||||| ||| | ||||| || || Sbjct 381 GGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTACT 440 Query 186078 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTT 186137 |||||||| ||||| || ||||| || || |||||||| | || ||| ||| || Sbjct 441 TTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 500 Query 186138 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-TG 186196 | || || || || || || || || | |||| ||| ||| || || | ||| || Sbjct 501 TTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTATG 559 Query 186197 GGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTT 186256 ||||||||| ||||||| || | | || |||| |||||||| || | ||| ||| Sbjct 560 GGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTTT 619 Query 186257 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAG 186316 | | || | ||||| | |||| | | || ||||||||| | || || ||||||||| Sbjct 620 TATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCGC 679 Query 186317 TCGTCTCGTAGGTATC---CGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGT 186373 ||| || || || | ||||||||||| || ||||| || |||| |||||| ||||| Sbjct 680 ACGT-TC--AGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGT 736 Query 186374 CTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTC 186433 || | || ||| | || |||||| | || || || |||||||| ||||| Sbjct 737 ATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAG 796 Query 186434 CTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGAC 186493 ||||| || || |||||||| | ||| | || ||| |||| || |||||||||||||| Sbjct 797 TTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGAC 856 Query 186494 GTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGC 186553 | | || |||||||||||||||||||| || ||| | | |||| |||| | | | || Sbjct 857 GCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 916 Query 186554 AATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATT 186613 || || |||| |||||| ||||| || | | |||||| || || || |||||||| Sbjct 917 TATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATT 976 Query 186614 CAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATT 186673 | |||||| | | || |||| ||||||||| || || ||||| ||||| ||| | || Sbjct 977 CCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTT 1036 Query 186674 CTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCT 186733 |||||| || |||||||| |||| || || || |||||| | || ||||||||| | Sbjct 1037 CTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTT 1096 Query 186734 CTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAA 186793 || || || |||| ||| | |||| || | ||||| | |||||| | || | || Sbjct 1097 ATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAAA 1156 Query 186794 CCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGA 186853 | | |||||||| ||||| || || || | | |||||||| || || |||||||| Sbjct 1157 CTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCGA 1216 Query 186854 GACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGT 186913 |||||||| || || || ||||| | ||||||||| | ||||| |||||||| | Sbjct 1217 AACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 1276 Query 186914 GGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || ||||| |||||| || ||||| || |||||||| || || | || |||||||| Sbjct 1277 AGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTCT 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622038503340240