Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq3865 780 0.0 seq2255 562 3e-155 seq292 102 9e-17 >seq3865 Length=1303 Score = 780 bits (864), Expect = 0.0 Identities = 775/996 (78%), Gaps = 8/996 (1%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||| | ||| | ||||| || || || ||||| || |||||||||| || || | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCC 164046 |||||||| ||| | | |||| || | ||| ||||||||||| ||| | | ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATC-TGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || |||||||| || ||||| ||||| || ||||||| | | || || ||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 |||||| ||||||||||| |||||| ||||||||||||| ||| | ||||||||||| | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||| ||| | | ||||| ||| | |||||||||||||||| |||| | | || Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCT--TACATGGGTCGTGAGTGGGAACTTTCTTAC 164284 | ||||||| | | || | | |||| |||||||||||||| |||||| | |||| | Sbjct 579 TTGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTC 636 Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 ||| | ||||||||||| ||||| ||||| |||||||| || || || || || | | Sbjct 637 CGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 696 Query 164345 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 164404 ||||| ||| | |||| ||| ||||||||||||| |||||||| | |||||| | || Sbjct 697 GCAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGT 756 Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 || ||||| || ||||||| |||| | || ||||| ||||| ||||||||||| |||||| Sbjct 757 ATTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCAC 816 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || ||||| ||| | || || || ||||| ||||| |||||| | ||| |||||||||| Sbjct 817 CCATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCAC 876 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| | ||||| ||||| | | ||||| || || ||||| || || ||| | Sbjct 877 GGTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCT 936 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 |||||| || ||||| || |||||||| ||||||||||| || ||||||||||||||| Sbjct 937 GGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTT 996 Query 164645 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 164704 |||||| | ||||||||||||||||| ||||||||||| ||||| | ||||||||| | Sbjct 997 GGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTA 1056 Query 164705 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGC-ACCATGGCATT 164763 || || |||||||| ||||||||||||| |||||| | || ||| | || ||||| || Sbjct 1057 GCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGG-TTTATCAACTATGGCTTT 1115 Query 164764 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAA 164823 |||||| |||||||||||||||||||| || | | || ||| |||||||| | || Sbjct 1116 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAA 1175 Query 164824 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAA 164883 ||| ||||| ||| | ||||||||||| | || |||||||| |||||||| ||||| Sbjct 1176 CACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAA 1235 Query 164884 TGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 || |||||||||||||| ||| | ||| ||| ||| Sbjct 1236 CGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 562 bits (622), Expect = 3e-155 Identities = 742/1025 (72%), Gaps = 8/1025 (1%) Strand=Plus/Plus Query 165149 TTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTC 165208 ||||||||||| | |||||||||| | |||||||||||| || || || ||||| Sbjct 320 TTGGTTCGATGACGCTGACGACTGGTTACGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 379 Query 165209 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTAC 165268 ||| | | || || || |||||| | || | || |||||| | ||||| ||||| Sbjct 380 AGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTAC 439 Query 165269 TTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTT 165328 ||| || || |||||| || ||||| | || | ||| || | || ||| ||||| Sbjct 440 TTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 499 Query 165329 TCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCT-AT 165387 | ||||| || |||||||| |||||| | |||| ||| ||| || | |||| || Sbjct 500 CTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTTAT 558 Query 165388 GGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTT 165447 |||||||||| ||||||| ||||| | || ||||| |||||||| || | ||| ||| Sbjct 559 GGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCTT 618 Query 165448 TTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGG 165507 || | || | ||||| | |||| | || ||||||||| | || || |||||| | | Sbjct 619 TTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATCG 678 Query 165508 CACG---ACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 165564 |||| | ||| | | ||||| ||||| |||||||| ||||||| ||||||||||| Sbjct 679 CACGTTCAGTTAACT---TACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTG 735 Query 165565 TATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGT 165624 ||||| | ||||| | || || ||| | || ||||| |||||||| || || Sbjct 736 TATTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTA 795 Query 165625 CGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGA 165684 || || || || ||||||||||| ||| | | ||| |||| |||||||| ||||||| Sbjct 796 GTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGA 855 Query 165685 CGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTG 165744 |||| || || || ||||||||||| || || ||| | ||||| | || || | | || Sbjct 856 CGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 915 Query 165745 CCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTT 165804 | ||||| |||| ||| || || || || || | |||||| ||||| || ||||| | Sbjct 916 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACAT 975 Query 165805 TCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTT 165864 || ||||| | ||||| | ||| ||||| || || ||||| ||||| ||||||| Sbjct 976 TCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTT 1035 Query 165865 TCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGC 165924 |||||||||| || || ||| |||||||| || || |||||| | |||||||| ||| Sbjct 1036 TCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGT 1095 Query 165925 TCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCA 165984 | || || || || | || | |||| |||||||| | |||||| | ||| | | Sbjct 1096 TATTCGTACCAGTTACTGGTTTATGGATGTCAGCTATTGGTGTAATTGGTTTAGCATTAA 1155 Query 165985 ATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTG 166044 | | |||||||| || || || || || || ||| | || || || || |||||||| | Sbjct 1156 ACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCG 1215 Query 166045 AAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTG 166104 |||||||||| || ||||||||||| ||||||||||| | ||||| ||| ||||| || Sbjct 1216 AAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTC 1275 Query 166105 TAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCAC 166164 ||||||||| ||||| || || ||||| |||||||| || || | || ||||| | Sbjct 1276 AAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTC 1335 Query 166165 TTTAA 166169 | ||| Sbjct 1336 TATAA 1340 >seq292 Length=128933 Score = 102 bits (112), Expect = 9e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 164121 CTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAA 164180 |||| |||| ||||||||||||| ||| | ||||||||||| | |||||||| ||| Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 164181 GTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTC 164236 | | ||||||||| | |||||| |||||||| |||| | || |||| ||||||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557625806270640