Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq3865 776 0.0 seq2255 571 7e-158 seq292 84.2 3e-11 >seq3865 Length=1303 Score = 776 bits (860), Expect = 0.0 Identities = 777/998 (78%), Gaps = 10/998 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||| | ||| | || || || | || ||| | || |||||||||| ||||| | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||| ||| | | | || | |||||| |||||| |||||||||| || ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAAC-ATCTGTATTCATCATCGCTTTCGTTGCAGCTCC 398 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || ||||||||||| ||||||||||| || ||||||| | | || || ||||| Sbjct 399 TCCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAA 458 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||||||||||||||| | ||| ||||||||||||||||| | |||||||| || | Sbjct 459 CATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGT 518 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| || ||| | || |||||| | ||||| |||||||||| |||| | | | Sbjct 519 ATGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGT 578 Query 177897 CTTCCACTTCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTTTCTTACC 177955 | ||||||| | | ||| | | ||| |||||||||||||| |||||| | |||| || Sbjct 579 TTGCCACTTCTTATTAGGTGTTTGCTGC-TACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 177956 GCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTG 178015 | ||||||||||||| |||||| |||||| |||||||| ||||| || || || ||| Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 | || ||| | | || ||| ||||||||||||| |||||||||| |||||| | |||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 | ||| || ||||||| |||| | || |||||||| || ||||||||||| ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | ||||||||||| || || |||||||| |||||||||||| | ||| ||| ||||||| Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTA 178253 ||||| | ||||| || || | | |||||||| || || |||||| |||| ||| Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACGC 935 Query 178254 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTT 178313 ||||||| ||||||||||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 936 TGGTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTT 995 Query 178314 CGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCT 178373 ||||| | || ||||||||||| || ||||||||||| ||||| | ||||||||| | Sbjct 996 TGGTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTT 1055 Query 178374 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGC-ACCATGGCAT 178432 || || |||||||| |||||||||||||||||||| | ||| ||| | || ||||| | Sbjct 1056 AGCTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGT-TTATCAACTATGGCTT 1114 Query 178433 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGA 178492 ||||||| |||||||||||||||||||| || | | || ||| || || | | Sbjct 1115 TCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAA 1174 Query 178493 ACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTA 178552 |||| ||||| ||| | ||||||||||| | ||||||||||| |||||||| |||| Sbjct 1175 ACACTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTA 1234 Query 178553 ATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 | || |||||||||||||| ||| | ||| ||| |||| Sbjct 1235 ACGCGCACAACTTCCCTCTAGACTTAGCTTCTGTTGAA 1272 >seq2255 Length=6208 Score = 571 bits (632), Expect = 7e-158 Identities = 747/1021 (73%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 178836 TGGTTTGATGTACTC-GATGACTGGCTTAAG-CGTGATCGGTTCGTTTTTGTTGGTTGGT 178893 ||||| |||| || | || |||||| ||| | | || || ||||| || || ||||||| Sbjct 321 TGGTTCGATG-ACGCTGACGACTGG-TTACGTCAAGACCGTTTCGTATTCGTAGGTTGGT 378 Query 178894 CAGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAA 178953 |||| | | || || || ||||||| | ||| | || |||||| | || || || | Sbjct 379 CAGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACTA 438 Query 178954 CATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATT 179013 | || || || || ||||| || ||||| | ||| |||| || | || || ||||| | Sbjct 439 CTTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAACT 498 Query 179014 TCCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCT-A 179072 || | ||||||||||| || || || || | | | || || || || |||| | Sbjct 499 TCTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCTTTA-TTATTCTTA 557 Query 179073 TGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCT 179132 |||||||| |||||||| || || || || ||| |||||||| || ||||| || Sbjct 558 TGGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGCT 617 Query 179133 TTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 179192 ||| | || | |||||| | || | | | || ||||||||| | || || ||||||||| Sbjct 618 TTTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAATC 677 Query 179193 GCACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTC 179252 |||||| ||| | ||||| ||||| || || || || |||| ||| |||||||| Sbjct 678 GCACGTTCAGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGCTGTA 737 Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 || || ||||| | || || ||| | || || || ||||||||||| || Sbjct 738 TTCACTTCAGTTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGT 797 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| ||||| || || ||||| ||| | | ||| | ||||| ||||||||||||||| Sbjct 798 TTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAACTGGACG 857 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 || ||||| ||||||||||||||||| || ||| | | || | || || | ||||| Sbjct 858 CTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 917 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 ||||| |||||||| || || |||||| | ||||||||| ||||| | || |||||| Sbjct 918 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAACACATTC 977 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 |||||| | || || |||| ||| || || || || ||||||||||| ||||||||| Sbjct 978 CGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAACCGTTTC 1037 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 |||||||| ||||| ||| | || ||| || || |||||| |||| ||||| ||||| Sbjct 1038 TGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTCATGTTA 1097 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGC-ATTGGTATTATTGGTCTTGCACTTAA 179671 || || || || | ||| | |||| || ||| |||||| | |||||| | ||| |||| Sbjct 1098 TTCGTACCAGTTACTGGTTTATGGATGTC-AGCTATTGGTGTAATTGGTTTAGCA-TTAA 1155 Query 179672 CCTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCG 179730 |||| | ||||| ||||| ||||||||||| || | || ||||| || || ||||||| Sbjct 1156 ACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCAGAGTTCG 1215 Query 179731 AGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAG 179790 | |||||||| || || |||||||| | ||||||||| | |||||||||||||| | Sbjct 1216 AAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATGGCTGCTC 1275 Query 179791 TCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTC 179850 || ||||| |||||| || ||||| || ||||||||||| || | || ||||||| Sbjct 1276 AAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGTAACGCTC 1335 Query 179851 T 179851 | Sbjct 1336 T 1336 >seq292 Length=128933 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 177791 CTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTT 177850 |||| || || ||||||||||||||||| | |||||||| || | |||||||| || | Sbjct 40791 CTGTAGTCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAGTATGGGAAGCTGCAT 40732 Query 177851 CTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTC 177906 || | || || ||| | ||||| |||||||| |||| | || | | ||||||| Sbjct 40731 CTTTAGACGAATGGTTATACAACAGTGGTCCTCACCAATTAGTCGTGTGCCACTTC 40676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596276624348320