Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq3865 742 0.0 seq2255 500 1e-136 >seq3865 Length=1303 Score = 742 bits (822), Expect = 0.0 Identities = 762/994 (77%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||| | ||| | || || ||||| |||||| | || |||||||||| || || | Sbjct 280 TTCTGTGAGTGGATTACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTAATC 339 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 ||||| || ||| | | ||||||| || ||||||||||| ||| | | ||||| Sbjct 340 ATGATTCCTTGCTTATTAACAGCAACATCTGTATTCATCATCGCTTTCGTTGCAGCTCCT 399 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || ||||||||||| ||||| ||||| ||| |||||||| | | || ||||||||| Sbjct 400 CCAGTTGACATCGACGGTATCCGTGAACCAGTTTCTGGTTCTTTATTATACGGTAACAAC 459 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 ||||| ||||||||||| | || |||| ||||| || ||| | |||||||| || | Sbjct 460 ATCATTTCTGGTGCTGTAATCCCTACTTCTAACGCTATTGGTTTACACTTCTACCCAGTA 519 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | || || ||||| |||||||||||||||| |||| | | || Sbjct 520 TGGGAAGCTGCATCTTTAGACGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTT 579 Query 169652 TTCCACTTCCTCATCGGCATCTATGCT--TACATGGGTCGTGAGTGGGAATTGTCCTATC 169709 | ||||||| | | || | | |||| |||||||||||||| |||||||| || | | Sbjct 580 TGCCACTTCTTATTAGG--TGTTTGCTGCTACATGGGTCGTGAATGGGAATTATCTTTCC 637 Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCG 169769 || | |||||||| || |||||| ||| ||||||||||| || ||||| || || | | Sbjct 638 GTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 697 Query 169770 CTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTA 169829 | |||||| | ||||||| | || ||||| || |||||||||| ||||||| | |||| Sbjct 698 CAGTTTTCTTAATCTACCCTATCGGTCAAGGTTCATTCTCTGACGGTATGCCTTTAGGTA 757 Query 169830 TCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889 | || || || || |||| |||| | || ||||||||||| ||||||||||| ||||||| Sbjct 758 TTTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAACACAACATCCTTATGCACC 817 Query 169890 CCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACG 169949 | ||||||||| | |||||||| || || |||||||| ||| | || || ||||||| Sbjct 818 CATTCCACATGTTAGGTGTTGCTGGTGTTTTTGGTGGTTCTTTATTCTCTGCAATGCACG 877 Query 169950 GTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATG 170009 || | || || || | | |||||||||| || || ||||| || ||| || Sbjct 878 GTTCTTTAGTTACATCTTCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGCTG 937 Query 170010 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCG 170069 ||||| ||||||||||| ||||| || ||||||||||| || |||||||||||||| | Sbjct 938 GTTACCGTTTCGGTCAAGAGGAAGAAACATACAACATCGTAGCTGCTCACGGTTACTTTG 997 Query 170070 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 170129 |||| | || |||||||||||||| ||||||||||| |||||| | ||||||||| | | Sbjct 998 GTCGTTTAATTTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCTTAG 1057 Query 170130 CAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCA 170189 | || |||||||| | || ||||||||||| ||| | ||| | || || ||||| |||| Sbjct 1058 CTGCTTGGCCTGTAATCGGTATCTGGTTCACTGCTTTAGGTTTATCAACTATGGCTTTCA 1117 Query 170190 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 170249 |||| |||||||||||||||||||| || | | || ||| |||||||| | |||| Sbjct 1118 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTTGACTCTCAAGGTCGTGTATTAAACA 1177 Query 170250 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 170309 | ||||| ||| | ||||||||||| | || |||||||| |||||||| ||||| | Sbjct 1178 CTTGGGCTGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAACGTAACG 1237 Query 170310 CTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 | |||||||||||||| ||| | ||| ||| ||| Sbjct 1238 CGCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 1271 >seq2255 Length=6208 Score = 500 bits (554), Expect = 1e-136 Identities = 741/1035 (72%), Gaps = 24/1035 (2%) Strand=Plus/Plus Query 170592 TGGTTCGATGTCCTGGATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGG 170648 |||||||||| | || |||||| | |||| || || || ||||| || || ||| Sbjct 321 TGGTTCGATGACGCTGACGACTGGTT---ACGTCAAGACCGTTTCGTATTCGTAGGTTGG 377 Query 170649 TCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACG 170708 || ||| | | || || || |||||| | ||| | || || ||| | || || || Sbjct 378 TCAGGATTATTACTATTACCATGTGCTTACTTCGCAGTAGGTGGTTGGTTAACTGGTACT 437 Query 170709 ACATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAAT 170768 || |||||||| ||||||||| ||||| | || | ||| ||| | |||||| ||| Sbjct 438 ACTTTTGTTACTTCTTGGTACACACACGGCTTAGCTACTTCTTACTTAGAAGGTTGTAAC 497 Query 170769 TTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 170828 ||| | || || ||||| || || || || || |||| ||| ||| || || | ||| Sbjct 498 TTCTTAACTGCTGCTGTTTCTACACCAGCAAATAGCATGGCTCACTCT-TTATTATTCTT 556 Query 170829 -TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAA 170887 ||||||||||| |||| || || || ||| |||| |||||||| || | ||| Sbjct 557 ATGGGGTCCTGAAGCTCAAGGTGACTTTACACGTTGGTGTCAACTTGGCGGTTTATGGGC 616 Query 170888 TTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAAT 170947 |||| | || | ||||| | |||| | | || ||||||||| | || || |||||||| Sbjct 617 TTTTATTGCTTTACACGGTTCATTTGGTTTAATTGGTTTCATGTTACGTCAATTTGAAAT 676 Query 170948 CAGTCGTCTCGTAGGGA--TTA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGC 171004 | ||| || || | ||| | || ||||| || || || ||||||| |||||| || Sbjct 677 CGCACGT-TC--AGTTAACTTACGTCCATACAACGCTATTGCATTCTCTGCTCCTATTGC 733 Query 171005 TGTGTTTG--TCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCA 171062 ||| || |||| | ||| | || || ||| | || || ||| |||||||||| || Sbjct 734 TGTATTCACTTCAG--TTTTCTTAATTTACCCTTTAGGTCAATCAGGTTGGTTCTTTGCT 791 Query 171063 CCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAAC 171122 ||| ||||| ||||| ||||||||||| ||| | | ||| | || || ||||||||| Sbjct 792 CCTAGTTTTGGTGTTGCCGCAATCTTCCGTTTCATCTTATTCTTCCAGGGGTTCCACAAC 851 Query 171123 TGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTT 171182 ||||| || || ||||| || |||||||||||||| ||| | | || | ||| || | Sbjct 852 TGGACGCTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTA 911 Query 171183 TCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAAC 171242 | ||| ||||| |||| ||| || || || || || | |||||| ||||| || ||| Sbjct 912 TGTGCTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGACGGTGACGGTGCGAAC 971 Query 171243 ACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAAT 171302 || || ||||| || | ||||| | ||||| ||||| |||||||| ||||| || Sbjct 972 ACATTCCGTGCATTCAACCCAACTCAAGCAGAAGAAACATACTCTATGGTTACTGCAAAC 1031 Query 171303 CGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTT 171362 ||||||||||| || || || ||| | || ||| || || |||||||| || ||||| Sbjct 1032 CGTTTCTGGTCTCAAATCTTCGGTGTTGCTTTCTCAAACAAACGTTGGTTACACTTCTTC 1091 Query 171363 ATGCTGTTTGTTCCTGTCATGGGTCTTTGG--GTCAGTAGTCTGGGGATTATTGGTCTTG 171420 ||| | || || || || | ||| | ||| ||||| | | || | |||||| | | Sbjct 1092 ATGTTATTCGTACCAGTTACTGGTTTATGGATGTCAG--CTATTGGTGTAATTGGTTTAG 1149 Query 171421 CTCTTAATCTTA-GGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCA 171479 | |||| |||| | ||||| || ||||| || || | | ||||||||||| ||| Sbjct 1150 C-ATTAAACTTACGTGCTTACGACTTCGTTTCACAAGAAATTCGTGCAGCAGAAGACCCA 1208 Query 171480 GAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATG 171539 |||||||| |||||||| || || |||||||| | ||||||||| ||||||| |||||| Sbjct 1209 GAGTTCGAAACGTTCTACACTAAAAACATCCTTCTTAATGAAGGTATTCGTGCTTGGATG 1268 Query 171540 GCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGC 171599 || | ||||||||| |||||| || || |||||||| ||||| |||||||||| Sbjct 1269 GCTGCTCAAGACCAACCGCATGAACGTTTAGTATTCCCAGAAGAAGTATTACCTCGTGGT 1328 Query 171600 AATGCACTTTGATTT 171614 || || || | |||| Sbjct 1329 AACGCTCTATAATTT 1343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592168035027040