Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq12 161 7e-35 seq879 149 5e-31 seq83 89.7 4e-13 seq109 84.2 2e-11 >seq12 Length=425388 Score = 161 bits (178), Expect = 7e-35 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| |||||| |||||| |||||||||||||| Sbjct 401066 CATGCCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATC 401125 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| ||||||||||||| |||||||| |||| Sbjct 401126 AGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGG 401185 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||| | | | |||||||| | || || Sbjct 401186 GGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTC 401245 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||| || ||||| || || |||||||| ||||| || |||||| Sbjct 401246 GACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| |||||| |||||| ||||||||||| || Sbjct 401762 CATGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 401821 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || ||||||||||| || |||||||| | |||||||| || | Sbjct 401822 AGCCAGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGG 401881 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| ||| ||||||||||| | | | |||||||| | || || Sbjct 401882 GGGGATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGACGACTC 401941 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||| || ||||| || || |||||||| || ||||| |||||| Sbjct 401942 GACCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 401993 Score = 143 bits (158), Expect = 2e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| |||||| |||||| ||||||||||| || Sbjct 400610 CATGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 400669 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||| | |||||||| || | Sbjct 400670 AGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGG 400729 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| ||| ||||||||||| | | | |||||||| | || || Sbjct 400730 GGGGATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTC 400789 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || |||||||| ||||| || |||||| Sbjct 400790 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 400841 Score = 140 bits (154), Expect = 2e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| ||||| |||||| ||||||||||| || Sbjct 400838 CATGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC 400897 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| ||||||||||| | ||||||||| || | Sbjct 400898 AGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 400957 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||| ||||| || ||||||||||| | | | |||||||| | || || Sbjct 400958 GGGGATACCCTCCTTGTCTTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTC 401017 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || |||||||| || || || |||||| Sbjct 401018 GACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 401069 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| |||||| |||||| ||||||||||| || || Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | |||||||| || | || Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||| ||||| ||| ||||||||||| | | | |||||||| | || || ||| Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCAATGGTGTCAGACGACTCAACC 400565 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || |||||||| || || || |||||| Sbjct 400566 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 400613 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| || ||| |||||| ||||||||||| || Sbjct 401294 CATGCCGCCGCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 401353 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || || ||| | || ||||||||||| ||||||||||||| |||||||| |||| Sbjct 401354 AGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTG 401412 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||| ||| |||||| |||||| ||||||||||| || Sbjct 401990 CATGCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTC 402049 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 || || ||| | || ||||||||||| ||||| ||||||| |||||||| |||| Sbjct 402050 AGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTG 402108 Score = 82.4 bits (90), Expect = 5e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||| ||||| || || |||||| ||||||||||| Sbjct 402515 TTGCATACCACCACGCAGGCGCAGCACGAGGTGCAGGGTAGACTCCTTCTGGATGTTGTA 402574 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || | ||| | || ||||||||||| ||||||||||| | |||||||| || Sbjct 402575 GTCAGCCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTC 402634 Query 44224 TGAAGGCACACCT 44236 || || | |||| Sbjct 402635 TGGGGGGATACCT 402647 >seq879 Length=48288 Score = 149 bits (164), Expect = 5e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 2738 CATGCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 2679 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| | || ||||||||||| ||||| || |||| ||||||||| || | Sbjct 2678 GGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGG 2619 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||| | | | |||||||| | || || Sbjct 2618 GGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTC 2559 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 2558 AACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2507 Score = 134 bits (148), Expect = 1e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| || |||||||| || Sbjct 4038 CATGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTC 3979 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| ||||| ||||| | ||||||||| || | Sbjct 3978 AGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGG 3919 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||| | | | |||||||| | || || Sbjct 3918 GGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCAGAAGACTC 3859 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | || || || || || || || ||||| |||||||| |||||| Sbjct 3858 AACCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 2510 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTC 2451 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| || ||| | || ||||||||||| ||||| ||||| | ||||||||| || Sbjct 2450 GGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTC 2394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| ||||| |||||| ||||||||||| || Sbjct 3810 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTC 3751 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| | || ||||||||||| || ||||| |||| |||||||| || Sbjct 3750 AGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 3694 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | ||| | || ||||||||| |||||| |||||| ||||||||||| || | Sbjct 4672 TTCCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 4613 Query 44169 CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 | || ||| | || ||||||||||| || || ||||| | |||||| || || Sbjct 4612 CCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTC 4558 >seq83 Length=234864 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 || |||| ||||| ||| ||||||||||||| | | |||||||| | ||| |||| Sbjct 62984 GCTCACCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 62925 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| ||| || ||||| || || |||||||| || ||||||||||| Sbjct 62924 CTTCCAACGTGATGGTCTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 62876 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44229 GCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCA 44288 || |||| ||||| || ||||||||||||| | | |||||||| | ||| |||| Sbjct 62427 GCTCACCCTCCTTGTCTTGGATCTTCTGCTTCACGTTGTCGATGGTGTCCGAGGACTCCA 62368 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | |||| ||| || ||||| || || |||||||| ||||| ||||||||| || Sbjct 62367 CTTCCAACGTGATAGTCTTGCCGGTCAGGGTCTTGACGAATATTTGCATGTTG 62315 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 |||| || || | ||| | || ||||||||| || || |||||| || |||||||| | Sbjct 63351 TCATGCCACCGCGCAGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGT 63292 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | || || ||| | || ||||||||||| || |||||||| | ||||||||| |||| Sbjct 63291 CAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTG 63232 >seq109 Length=210383 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Minus Query 44232 CACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 |||| ||||| ||| ||||||||||| || ||| | |||||||| | || ||||| Sbjct 133933 CACCCTCCTTGTCCTGGATCTTCTGCTTGACATTGT--CGATGGTGTCAGAAGACTCCAC 133876 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||| | || || ||||| |||||||||||||| ||||| || |||||| || Sbjct 133875 CTCAAGGGTGATAGTCTTACCCGTGAGGGTCTTTACGAAAATCTGCATGGTG 133824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359972402954934