Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016- 04-26] 4,102 sequences; 141,916,335 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq879 147 5e-30 seq12 145 2e-29 seq109 87.8 4e-12 >seq879 Length=48288 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 2511 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCTTCTGAC 2570 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 2571 ACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 2630 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || ||||| | || || ||||| || ||| || Sbjct 2631 CGTCTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATC 2690 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 2691 CAGAAGGAGTCTACCCTGCACCTGGT 2716 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| ||||| || ||||| || || ||| Sbjct 3811 CAGATCTTCGTCAAGACGCTGACTGGCAAAACCATCACTCTTGAGGTTGAGTCTTCTGAC 3870 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || ||||| |||||||| || || || || ||||||||||| Sbjct 3871 ACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 3930 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || || || || ||| | Sbjct 3931 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTACAACATT 3990 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 3991 CAGAAGGAGTCTACGCTGCACCTGGT 4016 >seq12 Length=425388 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || ||||| || ||||| || || ||| Sbjct 401293 CAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCTGAC 401234 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || ||||| |||||||| || || || || || |||||||| Sbjct 401233 ACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAG 401174 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| || ||||| | || || || ||||| ||| || Sbjct 401173 CGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCTGATTACAACATC 401114 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 401113 CAGAAGGAGTCCACGCTGCA-CTTG 401090 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || ||||| || ||||| || || ||| Sbjct 401989 CAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACGCTTGAGGTCGAGTCGTCTGAC 401930 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 401929 ACCATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAG 401870 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || ||||| || ||||| | || || || || || ||| || Sbjct 401869 CGCCTCATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACACTGGCTGACTACAACATC 401810 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 401809 CAGAAGGAGTCCACGCTGCA-CTTG 401786 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || ||||| || || || ||||||||||||||||| || ||| Sbjct 403139 CAGATTTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGAC 403080 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || || || |||||||| || |||||||||||||| || || Sbjct 403079 ACTATTGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGG 403039 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || || || || || || |||||||| ||||| || || ||| Sbjct 402517 CAAATTTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCTGAC 402458 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 || ||||| |||||||| || |||||||||||||| || || Sbjct 402457 ACTATCGACAACGTCAAGCAGAAGATTCAGGACAAGGAGGG 402417 >seq109 Length=210383 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||| |||||||| || ||| Sbjct 133831 CAGATTTTCGTAAAGACCCTCACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCTGAC 133890 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| || ||||| |||||||| || || Sbjct 133891 ACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGG 133931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203667935649788