Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20asymmetrica_20[genbank_20GCA_5F001662385.1_202016-
04-26] 4,102 sequences; 141,916,335 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq879 183 3e-41
seq12 174 1e-38
seq83 100 3e-16
>seq879
Length=48288
Score = 183 bits (202), Expect = 3e-41
Identities = 180/230 (78%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| || || | |||||| |||||||| ||||||||||||||| ||||| |
Sbjct 4035 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGC 3976
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||||| | || || ||||||||||||||||| || || ||||| ||||||| |||
Sbjct 3975 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 3916
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| || ||||| ||| | | | ||||| ||||| |
Sbjct 3915 AATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATGGTGTCAGAAGACTCAA 3857
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || ||||| || ||||||||||| ||||| |||||||||
Sbjct 3856 CCTCAAGAGTGATGGTTTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 3807
Score = 156 bits (172), Expect = 4e-33
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || || || | |||||| ||||| || ||||||||| ||||| |||||||
Sbjct 2735 GCCACCACGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2676
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||||||||| ||||| ||||| ||||||| |||
Sbjct 2675 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGG 2616
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| || ||||| ||| | | | ||||| ||||| |
Sbjct 2615 AATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATGGTGTCAGAAGACTCAA 2557
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || ||||| ||||| || || |||||||||
Sbjct 2556 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 2507
Score = 116 bits (128), Expect = 3e-21
Identities = 100/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || || | |||||| ||||||||| ||||||||| ||||| ||||| |
Sbjct 4670 CCGCCACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4611
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||| ||||| || || ||||||||||||| ||||
Sbjct 4610 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATGAGACGCTGTTGGTCCGGGGGA 4551
Query 41756 ACGC 41759
| ||
Sbjct 4550 ATGC 4547
Score = 109 bits (120), Expect = 5e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| || ||||||||| ||||| |||||||
Sbjct 2507 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2448
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||||||||| || || ||||| ||||||| |||
Sbjct 2447 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 2388
Query 41755 AACGC 41759
|| ||
Sbjct 2387 AATGC 2383
Score = 105 bits (116), Expect = 6e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| |||||||| ||||||||| ||||| ||||| |
Sbjct 3807 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 3748
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750
|||||||| | || || ||||||||||| || || ||||||||||| |||||||
Sbjct 3747 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCG 3692
Score = 100 bits (110), Expect = 3e-16
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| |
Sbjct 3276 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCC 3217
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750
|||||||| | || || ||||||||||| || || ||||||||||| |||||||
Sbjct 3216 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCCG 3162
>seq12
Length=425388
Score = 174 bits (192), Expect = 1e-38
Identities = 178/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| ||||| | ||||| ||||||||| ||||||||| ||||| || || |
Sbjct 401069 GCCACCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGC 401128
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || |||||||||||||| || ||||||||||| ||||| | |||
Sbjct 401129 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 401188
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| || |||||||||| ||| || ||||| ||| | | | ||||| |||||| |
Sbjct 401189 AATGCCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATGGTGTCAGACGACTCGA 401247
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | ||| || || || || ||||| ||||| |||||||||||||||
Sbjct 401248 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 401297
Score = 159 bits (176), Expect = 3e-34
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||||| ||||||||| ||||||||| ||||| ||||| |
Sbjct 400613 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 400672
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| || || || |||||||| ||||| | |||
Sbjct 400673 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGG 400732
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||||| ||| | | | ||||| |||||| |
Sbjct 400733 GATACCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCAATGGTGTCAGACGACTCGA 400791
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || ||||| ||||| |||||||||||||||
Sbjct 400792 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCATG 400841
Score = 156 bits (172), Expect = 4e-33
Identities = 174/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||||| ||||||||| ||||||||| ||||| ||||| |
Sbjct 401765 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 401824
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| || || || |||||||| ||||| | |||
Sbjct 401825 CAGTGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGG 401884
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | |||||||||| ||| || ||||| ||| | | | ||||| |||||| |
Sbjct 401885 GATACCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCGATGGTGTCAGACGACTCGA 401943
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | ||| || || || || ||||| ||||| || || |||||||||
Sbjct 401944 CCTCAAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 401993
Score = 154 bits (170), Expect = 1e-32
Identities = 173/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|||||||| ||||| | ||||| ||||||||| ||||||||| ||||| ||||| |
Sbjct 400386 CCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 400445
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || ||||||||||| || || || |||||||| ||||| | |||
Sbjct 400446 AGCGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 400505
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||||| ||| | | | ||||| |||||| ||
Sbjct 400506 ATACCCTCCTTGTCCTGGATCTTCTGCTT-GACGTTGTCAATGGTGTCAGACGACTCAAC 400564
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||| | || || || || || ||||| ||||| || ||||||||||||
Sbjct 400565 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 400613
Score = 147 bits (162), Expect = 2e-30
Identities = 172/230 (75%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||||| |||||||| ||||||||| ||||| ||||| |
Sbjct 400841 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCAGC 400900
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || |||||||||||||| || || || ||||| ||||| | |||
Sbjct 400901 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 400960
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
| | ||||||||| ||| || ||||| ||| | | | ||||| |||||| |
Sbjct 400961 GATACCCTCCTTGTCTTGGATCTTCTGCTT-GACGTTGTCAATGGTGTCAGACGACTCGA 401019
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
|||| | || || || || || ||||| ||||| || ||||||||||||
Sbjct 401020 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCATG 401069
Score = 122 bits (134), Expect = 8e-23
Identities = 102/125 (82%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||||| ||||||||| ||||||||| ||||| ||||| |
Sbjct 401993 GCCGCCGCGCAGACGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 402052
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||||||||| ||||||||||| ||||| | |||
Sbjct 402053 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGG 402112
Query 41755 AACGC 41759
|| ||
Sbjct 402113 AATGC 402117
Score = 109 bits (120), Expect = 5e-19
Identities = 96/120 (80%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||||||||| ||||| | ||||| ||||| ||| ||||||||| ||||| ||||| |
Sbjct 401297 GCCGCCGCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 401356
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || |||||||||||||| || ||||||||||| ||||| | |||
Sbjct 401357 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCTGGGGG 401416
>seq83
Length=234864
Score = 100 bits (110), Expect = 3e-16
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| ||||| || || | |||||| ||||| || ||||||||||||||| ||||| |
Sbjct 63347 GCCACCGCGCAGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGAATGTTGTAGTCAGC 63288
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||||| | || || ||||||||||| || || || || ||||| ||||| | |||
Sbjct 63287 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGACGCTGCTGGTCTGGGGG 63228
Query 41755 AACGC 41759
|| ||
Sbjct 63227 AATGC 63223
Score = 86.0 bits (94), Expect = 6e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || || | ||||| |||| ||| ||| ||||| || || ||||| |
Sbjct 62874 CCGCCACGCAGGCGAAGCACCAAGTGCAACGTAGACTCTTTCTGGATATTGTAGTCAGCA 62815
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750
|||||||| |||| || ||||||||||| || || || |||||||| |||||||
Sbjct 62814 AGGGTGCGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATTAGGCGCTGCTGGTCCG 62760
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462280295362400
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