Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq235 104 5e-17 seq6203 91.5 3e-13 seq2824 91.5 3e-13 seq1277 91.5 3e-13 seq5827 89.7 1e-12 seq643 89.7 1e-12 seq2937 86.0 1e-11 >seq235 Length=65441 Score = 104 bits (114), Expect = 5e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 319858 GGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCG 319917 ||||| || || | ||||||||| |||| ||||||||||| || || || ||| | ||| Sbjct 26755 GGGAAGCCGTCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGCCCACACCG 26696 Query 319918 TTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGC-GTGTTGTTCAG 319976 || || || ||||| ||||||||| || || |||||| | | ||| | |||||| || Sbjct 26695 TTGGGGCCGCACAGGCCGTAGCGGCGGCCACGCTTCAGG-CGCAGCGCGGCGTTGTTGAG 26637 Query 319977 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 320030 ||||| || |||| || ||||| || || || || | ||||| || || || Sbjct 26636 CAGAATCTTGGCACCGTAGGCCAGCGAGAACTCGCAGTTGCACAGCTCATCGCC 26583 Score = 98.7 bits (108), Expect = 2e-15 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 319405 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 319464 ||||||| |||||| || ||||||||| |||||| |||| ||| | ||| Sbjct 27669 ACGAACTTGGACAGGTTACCCTTGTACACGCGCAGCTTGCGGTTGCA---GTAGTCGATG 27613 Query 319465 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 319524 || ||||| || ||| ||||| ||||||||||| ||||| || | | ||| || Sbjct 27612 ATGTGCGTGCACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACGATGATGGCCGACACC 27553 Query 319525 TCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTG 319584 | | || || ||||||| || |||| | ||||| ||| ||||||||| Sbjct 27552 GACGTGAGCGTGGTCAGGTAGGTCTCCAGCCACTTGACGTTGCCCACGTCGAGATGGTTG 27493 Query 319585 GTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCA-CGTGCAAGAGCGAG 319643 || |||||||| || ||||| | | | |||| ||||| |||| || || || || || Sbjct 27492 GTGGGCTCGTCCAGCAGCAGGATGTCGGGCTTCATGAGCA-TGCAGCGGGCCAGCGCCAG 27434 Query 319644 TTTCATTTTCCACCCTCCGGAAAG 319667 ||||| ||||| || ||||| || Sbjct 27433 CTTCATCTTCCAGCCACCGGACAG 27410 >seq6203 Length=3415 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 316 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 257 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 256 CCCCTCATTGGGC 244 >seq2824 Length=12096 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 11039 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 11098 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 11099 CCCCTCATTGGGC 11111 >seq1277 Length=25674 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 16625 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 16684 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 16685 CCCCTCATTGGGC 16697 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 24808 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 24867 Query 165769 CCCCACGATGGGC 165781 |||| | ||||| Sbjct 24868 CCCCTCATTGGGC 24880 >seq5827 Length=3898 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| ||||| ||||||| ||||||| |||||||||| Sbjct 1565 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 1506 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 1505 CCCTCATTGGGC 1494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 3304 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGG 3245 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 3244 CCCTCATTGGGC 3233 >seq643 Length=40979 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| ||||| ||||||| ||||||| |||||||||| Sbjct 9420 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 9479 Query 165770 CCCACGATGGGC 165781 ||| | ||||| Sbjct 9480 CCCTCATTGGGC 9491 >seq2937 Length=11610 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 319395 ACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTC 319454 |||| ||| |||||||||||||| || || | ||| | ||| ||||| | | | || Sbjct 661 ACGCACCTTGACGAACTCGGACAGGTTGCCGTGGTAGTACTTGAGCTTGCGCT---GCTC 717 Query 319455 GTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCAC 319514 ||| ||||| || |||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct 718 GTAGTGGATGATGTCGGTGCACACGGCGTCCAGGAAGCCAGAGTCGTGCGACACGATCAG 777 Query 319515 GCACGAAACGT 319525 ||| | |||| Sbjct 778 GCAGGTCACGT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057686582381570