Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq8888 102 7e-17 seq601 93.3 4e-14 seq2491 84.2 2e-11 >seq8888 Length=1414 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| ||||| ||| Sbjct 1104 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 1163 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | |||||||||| ||| Sbjct 1164 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1223 Query 21069 ACGCCT 21074 | |||| Sbjct 1224 ATGCCT 1229 >seq601 Length=42509 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 42432 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 42373 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| || | || || | |||||||||| ||| Sbjct 42372 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 42313 Query 21069 ACGCCT 21074 | |||| Sbjct 42312 ATGCCT 42307 >seq2491 Length=14023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| |||||||| || ||||||||||||| ||||| Sbjct 14021 GTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 13962 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 || | || || | |||||||||| ||| | |||| Sbjct 13961 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 13926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422207021826524