Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3145 165 8e-36 seq4172 138 1e-27 seq601 123 3e-23 seq8888 114 1e-20 seq611 105 7e-18 seq2609 104 2e-17 seq2491 100 3e-16 seq143 91.5 2e-13 >seq3145 Length=10667 Score = 165 bits (182), Expect = 8e-36 Identities = 138/169 (82%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 ||||| |||||| |||||||||||| |||| || |||||| ||||||| |||||| | Sbjct 120 CCTTCTCCGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTCTTCTCGGGCTCGT 179 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 || | |||| || ||||||||||| |||||||||||||||||||| || ||| ||||| Sbjct 180 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACG 239 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCT 117195 |||||||||| | |||||||| ||||| |||||| ||||| |||| Sbjct 240 AGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCT 288 >seq4172 Length=7077 Score = 138 bits (152), Expect = 1e-27 Identities = 143/185 (77%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 116681 GAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGC 116740 |||||||| |||||| | | |||| || |||||||| | | |||| ||||||| Sbjct 616 GAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTCAGCGACGGCGAGCGC 557 Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || |||||| |||| | |||||||| ||||| |||||||| ||||||||||||||||| Sbjct 556 CACTTCATCTCGCACATCCTGGCCTTCTTCGCGGCCAGCGATGGCATCGTCAACGAGAAC 497 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCG-GTGCTTCTACGGCTT 116859 |||| || ||||||| ||||||||||| || |||||| | | |||||| ||||| Sbjct 496 CTGGGCGTGCGTTTCATGAAGGAGGTGCAGCTGCCCGAGGTGAGACAGCTTCT-GGGCTT 438 Query 116860 TCAGA 116864 || || Sbjct 437 TCCGA 433 >seq601 Length=42509 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| |||| Sbjct 42308 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 42367 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | || |||||||| ||| ||||| || | Sbjct 42368 ACGCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCATCTGGTGCTGCGCCTGCGC 42427 Query 40912 GGCGGC 40917 || ||| Sbjct 42428 GGTGGC 42433 >seq8888 Length=1414 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 1228 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 1169 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || ||||| || ||| | ||| || | Sbjct 1168 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGC 1109 Query 40912 GGCGGC 40917 || ||| Sbjct 1108 GGTGGC 1103 >seq611 Length=42128 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 117082 CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG 117141 ||| ||| | |||| || ||||| ||||| ||| ||||||||||||||| | ||| Sbjct 15828 CAGCTTCTGCTCCATCTTCTGGCTGAAGAAGCGCCTGCTCATGCCCGGCCTGTCCTTCTC 15887 Query 117142 CAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAA 117201 ||||| ||||||||| | |||||||| ||||| |||||||| ||||| |||| | ||| Sbjct 15888 CAACGTGCTCATCTCTCGCGACGAGGGGCTGCACTGCGACTTCGCCTGCCTGCTCTACAA 15947 Query 117202 GCA 117204 ||| Sbjct 15948 GCA 15950 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 ||||||||| | |||||||| || ||||||||||||||||||||||||| ||||| ||| Sbjct 14731 TTCATCAAGAAGGTGCTGGCGTTCTTCGCCGCCAGCGACGGCATCGTCATGGAGAACCTG 14790 Query 116804 GTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 | ||||| ||| |||||||||||| Sbjct 14791 GCGGAGCGGTTCATGACCGAGGTGCAGGTG 14820 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/137 (75%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||||||| | || || || || | ||||||| ||||||||||||||||| Sbjct 15236 TTCAACGCCATCCACACCATCCCCACGGTGCAGAAGAAGGCGCAGTGGGCGCTGCGCTGG 15295 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 |||| || ||| || || |||| ||||||||||||||||| || ||| |||||| Sbjct 15296 ATCGGCGCCAGCA--GCAGC-TTCGCGGAGCGCCTGGTGGCCTTTGCCTGCGTGGAGGGC 15352 Query 117068 GTCTTCTTTTCGGGCAG 117084 || ||| |||||||| Sbjct 15353 ATCCACTTCTCGGGCAG 15369 >seq2609 Length=13299 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| ||| ||||| ||||| || || | |||| Sbjct 1745 GGCATTCCCCCCGACCAGCAGCGCCTTATCTTCGCCGGCAAGCAGCTTGAGGATGGGCGC 1804 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| ||||||||| || ||| ||||| | ||| Sbjct 1805 ACGCTAGCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTCGTGCTGCGCCTCAGG 1864 >seq2491 Length=14023 Score = 100 bits (110), Expect = 3e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 13927 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 13986 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAG 40881 ||||| ||||||||||||||||||||| Sbjct 13987 ACCCTGGCTGACTACAACATCCAGAAGGAG 14016 >seq143 Length=80130 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 56816 GGCATCCCCCCTGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 56875 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||||||| ||||||| Sbjct 56876 ACCCTGGCCGACTACAACATTCAGAAGG 56903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515153902406640