Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq601 87.8 2e-12 seq2609 82.4 9e-11 >seq601 Length=42509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||||| || |||||| || || ||||| |||||||| || ||| || Sbjct 42420 CGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGCCCG 42361 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| || ||||| || || ||||||||||| Sbjct 42360 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 42320 >seq2609 Length=13299 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| ||||||||||| || || ||||| || || || || ||| | Sbjct 1857 CGCAGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCA 1798 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 || || |||||||| || ||||| || || ||||||||||||| Sbjct 1797 TCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGG 1755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571745129266920