Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1311 96.9 7e-15 seq1107 95.1 3e-14 >seq1311 Length=25178 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 249265 CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTG 249324 || ||||| |||||||||| || |||| |||||||| || | || || |||||| Sbjct 6207 CGCAAGGGCGCGTTCGCCATCTACATGGAGCCCTGGCACGCGGACGTGTTTGACTTCCTG 6266 Query 249325 GACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTG 249384 ||| || |||||| ||||||| ||| | | || || ||||| |||||||||||| Sbjct 6267 GACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCCCGCGACCTTTTCTACGGCCTG 6326 Query 249385 TGGGTCTCCGACTTGTTCATG 249405 ||| || ||||| |||||||| Sbjct 6327 TGGATCCCCGACCTGTTCATG 6347 >seq1107 Length=28819 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 254253 GACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGC 254312 ||||| ||| ||| |||||||| || |||||||| ||||| || || || || Sbjct 16811 GACGCTCAGAACGCGCTCCGCCGCACCATGGAGACCTACTCCCGCGTCACCCGCTTCGTG 16870 Query 254313 CTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTT 254372 ||| ||||||||||||||||| ||||||| ||||| || || || ||||||||||| Sbjct 16871 CTGCTGTGCAACTACGTGTCGCGCATCATCGAGCCGCTCGCCTCGCGCTGCGCCAAGTTC 16930 Query 254373 CGATTCA 254379 || |||| Sbjct 16931 CGGTTCA 16937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073626911369152