Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1311 116 3e-21 seq3145 96.9 3e-15 >seq1311 Length=25178 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || || || || ||||| || ||||||| || |||||||| ||| ||||||| || Sbjct 6347 CATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCGCGGGCACGCGCCTCCTCCTT 6288 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| |||||| || |||| ||||| ||||||||||| ||||| ||||| | ||| Sbjct 6287 GCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCATGTA 6228 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 | ||| ||||||||| | ||| |||||||||| Sbjct 6227 GATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTGA 6191 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 ||||||||||| || ||||| || || ||| ||||| || ||||||| || |||| Sbjct 7393 GTGTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 7334 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 ||| || | ||||| | |||||||| ||||||||||| | || ||||||||||| Sbjct 7333 TTGGACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACCTG 7275 >seq3145 Length=10667 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 57963 TTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT- 58021 ||| ||||| | || | || ||| | || || || || || ||||| |||||| || Sbjct 122 TTCTCCGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTCTTCTCGGGCTCGTTC 181 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 ||| || | || ||| | ||||| |||||||| ||||||||||| || || |||||| Sbjct 182 TGCTCCA-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGA 240 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 | | || |||||||||||||| || || || || || || ||||| Sbjct 241 GCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCT 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445709904680880