Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3145 122 1e-22 seq1311 91.5 2e-13 >seq3145 Length=10667 Score = 122 bits (134), Expect = 1e-22 Identities = 122/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCG 125477 |||| | |||||||| ||| | || || |||||||||||||| ||||| | ||| ||| Sbjct 126 CCGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT 185 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 ||||||| ||||||||||||||||| ||||||||||| || || | |||||| | Sbjct 186 -CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 244 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || || ||||||||||| ||| ||||| ||| Sbjct 245 ATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCC 280 >seq1311 Length=25178 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 97203 CAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAAC 97262 ||||| ||||| || | |||||||| || |||||||| || || |||| |||| Sbjct 7275 CAGGTCGAGACCGGTAACCCGTACATGCTGTACAAGGACGCCTGCAACAGCAAGTCCAAC 7334 Query 97263 CAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || | || |||||||||||||| ||||||| |||||||| || || ||||||||| || Sbjct 7335 CAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACCGAGATCGTAGAGTACACC 7394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740965280009640