Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq5054 462 3e-125 seq4579 298 7e-76 >seq5054 Length=5139 Score = 462 bits (512), Expect = 3e-125 Identities = 517/688 (75%), Gaps = 2/688 (0%) Strand=Plus/Plus Query 135395 ACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTTCTCGCA 135454 || || ||||| | || | |||||||| || | |||||||| |||||| | Sbjct 857 ACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCATGTCTTCTTACT 916 Query 135455 GCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCAT 135513 || | ||| | || || | |||||||||||||| || || || || || || || || Sbjct 917 GCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGACATCGATGGTAT 975 Query 135514 CCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTAT 135573 ||| ||||| ||| | |||||||| | ||||| || ||||| || || ||||||||| | Sbjct 976 CCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCAGGTGCTGTTGT 1035 Query 135574 CCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGA 135633 || || ||||| ||||| ||||||||||| || || ||||||||||||||| | || Sbjct 1036 ACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCTTCTTTAGA 1095 Query 135634 TGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGT 135693 || ||| ||||||| ||||||||||| |||||| | || | |||||||||| | ||||| Sbjct 1096 CGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCCTTTTAGGTGT 1155 Query 135694 CTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGAT 135753 | || ||||||||||| || |||||| | || | ||| | |||||||| || ||||| Sbjct 1156 ATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTATGCGTCCATGGAT 1215 Query 135754 TTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTT 135813 ||| ||||||||||| || || || |||||| | ||||| ||| | || ||||| | Sbjct 1216 CGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTTAGTTTACCCAAT 1275 Query 135814 TGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACAT 135873 || |||||||| ||| || |||||||| | || ||||| || || ||||||| ||| Sbjct 1276 CGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTACATTTAACTTCAT 1335 Query 135874 GCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGC 135933 | | || ||||| || || |||||||| || ||||| || ||||||||||| || ||||| Sbjct 1336 GATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACATGTTAGGTGTTGC 1395 Query 135934 TGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCT 135993 ||| || || |||||||| | |||||||||||||| || || | || || || | | Sbjct 1396 TGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTT 1455 Query 135994 TGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGA 136053 | ||||| || ||||| ||||| ||| |||||| |||||||||||||| Sbjct 1456 AATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGTTTCGGTCAAGAAGA 1515 Query 136054 AGAGACTTACAACATTGTTGCTGCTCAT 136081 |||||||||||||||||| ||||||||| Sbjct 1516 AGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 136082 GGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACAC 136141 |||||||| |||||||| ||||||||||| || || ||||||||||||||||| ||||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 136142 TTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACG 136201 || ||| | ||||||||||| || ||||||| ||||| |||| | || |||| || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 136202 ATGGCGTTCAACCTCAATGGATTC 136225 ||||| |||||| | || || ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 >seq4579 Length=6132 Score = 298 bits (330), Expect = 7e-76 Identities = 369/505 (73%), Gaps = 0/505 (0%) Strand=Plus/Minus Query 137861 ATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTC 137920 |||||| |||| ||||||||| || | ||| || || ||||| || |||||||| Sbjct 4115 ATGGTTTGATGATGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 137921 TGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAAC 137980 || || ||||||| || ||||||||| || || ||||||||| ||||||| ||||| Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 137981 GTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTT 138040 ||||||||| ||||| || || || || || || ||| | ||||| ||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 138041 CCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 138100 | | || ||||| ||||| || || || | | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 138101 GGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTT 138160 ||||||||| ||||||| ||| || || |||| || ||||| || | ||| | || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 138161 TGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTC 138220 | | || | ||||| || ||| || | ||||| ||||||||||| |||||||| || | Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 138221 TCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTT 138280 |||| ||| | | ||||| || ||||| || || ||||| | ||| || ||||| || Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTT 3696 Query 138281 CGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTT 138340 | || ||||| || ||||| || |||||||| |||||||||||||||| ||| Sbjct 3695 CACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTT 3636 Query 138341 TGGTGTGGCAGCAATCTTCCGATTC 138365 |||||| |||||||||||||| ||| Sbjct 3635 TGGTGTTGCAGCAATCTTCCGTTTC 3611 Score = 233 bits (258), Expect = 2e-56 Identities = 240/314 (76%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 138564 ACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTT 138623 ||||| ||||||| |||||| ||||||||||| | ||||| || || ||||||||| Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 138624 CACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATT 138683 |||||||| ||| | || ||||| || | ||||| |||| | |||||||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 138684 GGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAA 138743 ||| | || | ||| |||| || ||||| ||||| || ||||| |||||||| || ||| Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 138744 GATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCC 138803 || |||||||| || || |||||||| || ||| || | | ||||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 138804 TGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCA 138863 ||||||||| | || ||||| || ||| |||||||| |||||||||||||| || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 138864 AGAGGCAACGCTCT 138877 | || |||||||| Sbjct 426 CGTGGTAACGCTCT 413 Score = 129 bits (142), Expect = 7e-25 Identities = 147/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 138366 CTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTA 138425 ||||| |||| | ||||| ||||||||||| | ||||| || || |||||||| || Sbjct 2139 CTGTTTTTCC---AAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTT 2083 Query 138426 GCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACT 138485 || ||| || | |||| |||| | | ||||||||||| |||||||| |||||||| || Sbjct 2082 GCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACA 2023 Query 138486 TTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAA 138545 || | ||||||||| || | || ||||| ||||| | ||||| || | ||| Sbjct 2022 TTATTTGAAGATGGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAA 1963 Query 138546 GAAACCTATTCAATGGT 138562 ||||| ||||| ||||| Sbjct 1962 GAAACATATTCTATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627888412905600