Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq5054 387 4e-103 >seq5054 Length=5139 Score = 387 bits (428), Expect = 4e-103 Identities = 512/708 (72%), Gaps = 2/708 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 ||||||| ||| | || || || ||||| | || | |||||||| || ||| | Sbjct 836 TTTTGTGCTTGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 895 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 |||||||| || | || |||| || | || || |||| || ||||| || ||| Sbjct 896 ATGATTCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 955 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||| || ||||| || ||||| |||||||| || || | | ||||| ||||| Sbjct 956 CCAGTAGACATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAAC 1015 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 |||||||| || || || || |||| || || || || || || ||||| || || || Sbjct 1016 ATTATTTCAGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATT 1075 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | ||||||| || |||||||| ||||| ||||| || ||||| | || Sbjct 1076 TGGGAAGCTGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTT 1135 Query 19590 TTCCACTTCTTAATAGGAGTA-GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||| | |||| ||| || || ||| ||| | | |||||| |||| | | | Sbjct 1136 TGCCACTTCCTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCG 1194 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 ||||| ||| | |||||||| || || || |||| ||| || | || ||| || Sbjct 1195 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGC 1254 Query 19709 TGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 ||| || | ||||||||| | || ||||| || || |||||||| | ||||| Sbjct 1255 TGTATTCTTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTAT 1314 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 || ||||| |||||||| ||| ||||||||||||| || ||||| ||||||||||| || Sbjct 1315 TTCAGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 1374 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 |||||||||| | ||||||||||| ||||| ||||| || | ||||||||||||||||| Sbjct 1375 GTTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGG 1434 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 || |||||||| || | ||| ||||||||||| | | ||| ||| || Sbjct 1435 TTCATTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGG 1494 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACA 19996 || ||||| ||||| |||||||| || || ||||| ||||| || Sbjct 1495 TTACCGTTTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCA 1542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144424209141084