Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5054 542 5e-149 >seq5054 Length=5139 Score = 542 bits (600), Expect = 5e-149 Identities = 544/701 (78%), Gaps = 4/701 (1%) Strand=Plus/Plus Query 211579 TGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTTATGATCCCA 211638 ||| | || ||||| | ||| | | || | |||||||| ||||| | ||||| ||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 211639 TGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCTCCCGTTGAT 211698 |||||||| |||||||| || || ||| | || |||||||| || || || || || Sbjct 905 TGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGAC 964 Query 211699 ATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCT 211758 ||||| || |||||||||||||| | ||||| | | || ||||||||||| || || Sbjct 965 ATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTCA 1024 Query 211759 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCA 211818 ||||| ||||| ||| |||| ||||| |||||| | |||||||| || || |||||||| Sbjct 1025 GGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGCT 1084 Query 211819 GCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTC 211878 || || | || || ||| | || || |||||||||||||| | | | | ||||||| Sbjct 1085 GCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTC 1144 Query 211879 CTTATCGGAATCT-CAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTAT 211937 ||| | || | | | || |||||||| | | |||||| | || | |||||||||||| Sbjct 1145 CTTTTAGGTGTATGCTGC-TACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGTAT 1203 Query 211938 GCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCT 211997 |||||| |||||| ||||||||| ||||| || ||| | || |||| ||||||||| | Sbjct 1204 GCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTCTT 1263 Query 211998 TGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAAC 212057 ||||||||| |||| || ||||||||||||||||||||||| |||||||| ||||| || Sbjct 1264 AGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGTAC 1323 Query 212058 ATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATAT 212117 ||| ||||||||| ||||||||||||| || || ||||||||||||||||| ||||| || Sbjct 1324 ATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCACAT 1383 Query 212118 GGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGT 212177 | ||||||||| ||| | || ||||| ||||||||||||||||||||||||| | || Sbjct 1384 GTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGT 1443 Query 212178 TACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTC-ACAGAACTATGGTTACAAGT 212236 ||| || || | ||||||||||| |||| || || ||| ||| |||||| | Sbjct 1444 TACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACA-AACGCAGGTTACCGTT 1502 Query 212237 TCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACAT 212277 |||| |||||||||||||| || ||||| || ||||| ||| Sbjct 1503 TCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 212420 TCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATG 212479 ||||||||||||||||||| || || || |||| || | ||||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 212480 TTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCC 212539 | | ||| | || ||| | ||||||||||| |||||||| | || || |||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 212540 CACTTGACTTAGCATCTGCTAAC 212562 | | |||||||| ||| ||||| Sbjct 5070 CGTTAGACTTAGCTTCTTCTAAC 5092 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 212278 GGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACAC 212337 || ||||| ||| | || |||||||| || || |||||||||||| | |||||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 212338 TTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACA 212397 |||||| | || | ||||| || ||| || | ||||| || || | ||| | | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 3748 Query 212398 ATGGCATTCAACCTAAATGGATTC 212421 |||||||||||| |||| || ||| Sbjct 3749 ATGGCATTCAACTTAAACGGTTTC 3772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807452852472840