Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq601 122 8e-23 seq3145 116 3e-21 seq8888 113 4e-20 seq1311 98.7 9e-16 seq2491 95.1 1e-14 seq143 89.7 5e-13 >seq601 Length=42509 Score = 122 bits (134), Expect = 8e-23 Identities = 103/127 (81%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | ||| | |||||||||||| || |||||||| || Sbjct 42433 GCCACCGCGCAGGCGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 42374 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 42373 CAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 42314 Query 131127 GATTCCT 131133 ||| ||| Sbjct 42313 GATGCCT 42307 >seq3145 Length=10667 Score = 116 bits (128), Expect = 3e-21 Identities = 137/180 (76%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 46133 GCAGC-ACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCttt 46191 ||||| ||||| ||| | |||||||| |||||||||| || ||||||||| |||| Sbjct 108 GCAGCGACCGCTCCTT-CTCCGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTC 166 Query 46192 ttttCTGGCA-GTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCT 46250 || || ||| ||| ||| ||||||| | |||| | ||| ||||||||||||| Sbjct 167 TTCTCGGGCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCT 225 Query 46251 GACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 || || ||||||||| || |||||||||||||||||||| || ||||| || || || Sbjct 226 CACCTTCTCCAACGAGCTCATCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCT 285 >seq8888 Length=1414 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | |||||||||||| || |||||||| || Sbjct 1103 GCCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 1162 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 1163 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 1222 Query 131127 GATTCCT 131133 ||| ||| Sbjct 1223 GATGCCT 1229 >seq1311 Length=25178 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 145664 TCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGC 145723 ||| |||| | ||||||||||| ||||| ||| || |||||||| ||||| || ||| Sbjct 7396 TCGGTGTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGC 7337 Query 145724 TGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACC 145783 || || || |||||||| ||||||||||| ||||||||||| || ||||| ||| Sbjct 7336 TGGTTGGACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACC 7277 Query 145784 TG 145785 || Sbjct 7276 TG 7275 >seq2491 Length=14023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || |||||||| || || |||||| |||||| ||||||||||| Sbjct 14022 GGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCC 13963 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| |||| | |||||||||||||| ||||| ||| Sbjct 13962 GGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCT 13926 >seq143 Length=80130 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| ||| || |||||| |||||| ||||||||||| ||| ||| Sbjct 56903 CCTTCTGAATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 56844 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 | | |||||||||||| || ||||| ||| Sbjct 56843 TCAGACGCTGCTGGTCAGGGGGGATGCCT 56815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471952978277760