Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq330 118 1e-21 seq4684 89.7 6e-13 >seq330 Length=56297 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 126181 GTGTAAATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGA 126240 ||||| ||||| || | | || | |||||||| |||| || ||||||||| |||||| Sbjct 35758 GTGTAGATGTAACGCGCCGAGGCGGCGTCCTTGCCGCCCTGCAGCCGCGTGCCGAACTGA 35817 Query 126241 CCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACA 126300 ||| || | || || | || ||||||| ||||| ||||||||||| | ||||| Sbjct 35818 CCGCTGGGGTGCAGCAGGTTGACGTTGTTGGAGCCCACGAAGTCCTGCGCCAGGTTGACG 35877 Query 126301 ATGG-TCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCC 126359 |||| || ||| ||| | ||||||||| | |||| | | ||||||||||||||| | Sbjct 35878 ATGGCTCCCGC-CAGCGACGTCTCGCCGTGGTGGTAGGCCGAGTGCTCGGCCACGTAGGC 35936 Query 126360 GCTCAGCTGCGCAACCT 126376 | |||||| || |||| Sbjct 35937 GGACAGCTGGGCCACCT 35953 >seq4684 Length=5897 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 15059 GGCGACAAGTTTTGCTCT-GGTATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCA 15117 ||||||||||| ||| || | ||| || ||||||||||||||||| | | | || Sbjct 1364 GGCGACAAGTTCGCCTCGCGGCACGGC-CAGAAGGGCACGTGCGGCATCACGTACACCAT 1306 Query 15118 GGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTG 15177 ||| ||||||||||| || || ||||| ||| ||||| ||| ||||||| || Sbjct 1305 GGAGGACATGCCCTTCACGGCCGAGGGCATCGTGCCGGACATCATCGTCAACCCGCACGC 1246 Query 15178 CATCCCGTCCCGCATGACCAT 15198 |||||| || ||||||||||| Sbjct 1245 CATCCCCTCGCGCATGACCAT 1225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611314513706400