Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq5054 479 3e-130 seq4579 260 2e-64 >seq5054 Length=5139 Score = 479 bits (530), Expect = 3e-130 Identities = 530/702 (75%), Gaps = 6/702 (1%) Strand=Plus/Plus Query 166063 TGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCA 166122 ||| |||| || || | |||||| | || | |||||||| || | | ||||||||| Sbjct 845 TGGATTACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATCATGATTCCA 904 Query 166123 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGA 166181 ||| | | ||||| ||| || |||||| |||||||| | || || || || || || Sbjct 905 TGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCCGCCAGTAGA 963 Query 166182 TATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTC 166241 |||||||| |||||||| || || |||| ||||| | || ||||||||||| || || Sbjct 964 CATCGATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATTATTTC 1023 Query 166242 TGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGC 166301 ||||||||||| || | || ||||| || |||||||||||||| || || |||||||| Sbjct 1024 AGGTGCTGTTGTACCAACTTCTAACGCTATCGGTCTTCACTTCTACCCAATTTGGGAAGC 1083 Query 166302 AGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTT 166361 || || | || |||||| | |||||||||||||||| ||| || | || | |||||| Sbjct 1084 TGCTTCTTTAGACGAATGGTTATATAACGGTGGTCCTTACCAACTAATCGTTTGCCACTT 1143 Query 166362 CCTCATCGGCATCTATGC--CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGT 166419 ||| | || | ||||| |||||||||||||||||||||||| || | ||| | ||| Sbjct 1144 CCTTTTAGG--TGTATGCTGCTACATGGGTCGTGAATGGGAATTATCGTTCCGTTTAGGT 1201 Query 166420 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 166479 |||||||| ||||| || || ||||| || || || || || || || || || ||| Sbjct 1202 ATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCTGCTTCAGCTGTATTC 1261 Query 166480 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGC 166539 | || || || |||| |||||||| ||||| |||| ||||| | ||||| || Sbjct 1262 TTAGTTTACCCAATCGGCCAAGGTTCATTCTCAGACGGTATGCCATTAGGTATTTCAGGT 1321 Query 166540 ACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCAT 166599 || || |||| |||| | || |||||||| |||||||||||||| |||||||| ||||| Sbjct 1322 ACATTTAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCGTTCCAC 1381 Query 166600 ATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTC 166659 ||| | ||||| || |||||||| ||||| ||| | ||||| || |||||||| | Sbjct 1382 ATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTA 1441 Query 166660 GTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAG 166719 |||||||| || | ||||||| || ||||||| || ||| |||| |||||| Sbjct 1442 GTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCTACAAACGCAGGTTACCGT 1501 Query 166720 TTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCAT 166761 || ||||||||||||||||| |||||||| || ||||||||| Sbjct 1502 TTCGGTCAAGAAGAAGAGACTTACAACATTGTAGCTGCTCAT 1543 Score = 141 bits (156), Expect = 1e-28 Identities = 120/145 (83%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 166762 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCAC 166821 |||||||| ||||| || ||||||||||||||||| |||||||||||||| || | ||| Sbjct 3629 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACAC 3688 Query 166822 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGC-AC 166880 |||||| | || || ||||| || ||||||| ||||| |||||| | ||| ||| | || Sbjct 3689 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 3747 Query 166881 CATGGCATTCAACCTCAACGGTTTC 166905 |||||||||||| | ||||||||| Sbjct 3748 TATGGCATTCAACTTAAACGGTTTC 3772 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 166904 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATG 166963 ||||||||||||| || | | || || |||||||| | ||||||||||| || Sbjct 4950 TCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGTGTATTAAACACTTGGGCGGACA 5009 Query 166964 TCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCC 167023 || ||||||||||| | |||||||||||||||||||||||||| ||||||||||||| Sbjct 5010 TCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 5069 Query 167024 C 167024 | Sbjct 5070 C 5070 >seq4579 Length=6132 Score = 260 bits (288), Expect = 2e-64 Identities = 358/498 (72%), Gaps = 2/498 (0%) Strand=Plus/Minus Query 167297 TGGTTTGATG-TCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 167355 |||||||||| | ||| ||||||||||| | ||||| || || || || || ||||| Sbjct 4114 TGGTTTGATGATGCTG-ATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 4056 Query 167356 TGGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGAC 167415 || ||| | ||||| || ||||||| | ||| | ||||||||| ||||||| || || Sbjct 4055 AGGTTTATTACTTTTCCCTTGTGCTTATTTTGCACTAGGTGGCTGGTTTACTGGTACAAC 3996 Query 167416 GTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTT 167475 |||||||| |||||||| || || || || || |||| | || ||| ||| || Sbjct 3995 TTTTGTTACATCATGGTATACTCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 3936 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | || ||||| || ||||| || || || | | | ||| |||||||| | |||| Sbjct 3935 CTTAACTGCAGCGGTTTCAACACCACCTAACAGTTTAGCTCACTCTCTTCTATTTGTTTG 3876 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| |||| || ||||||| | ||||| |||||||| || | ||||| || Sbjct 3875 GGGTCCTGAAGCTCAAGGTGATTTCACACGTTGGTGTCAGCTTGGTGGTTTATGGGCATT 3816 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 | | || | ||||| || |||| | | || || || |||||||| || ||||| || Sbjct 3815 TATTGCATTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 3756 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | | |||| | ||||| || || || |||||||| || | ||| |||||||| || Sbjct 3755 TCGTTCAGTAAACCTACGTCCATATAACGCTATTGCTTTCTCAGCTCCAATTGCTGTTTT 3696 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 |||||||| || || ||||| | || || || ||||||||||||| || || Sbjct 3695 CACTTCTGTTTTCCTAATTTATCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCAAGCTT 3636 Query 167776 TGGTGTTGCAGCGATATT 167793 |||||||||||| || || Sbjct 3635 TGGTGTTGCAGCAATCTT 3618 Score = 224 bits (248), Expect = 1e-53 Identities = 238/314 (76%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 167999 ACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTG 168058 ||||| ||||| |||||||| ||||| |||||| | |||||| || || |||||| | Sbjct 726 ACTGCAAACCGTTTCTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTT 667 Query 168059 CACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATC 168118 |||||||| ||| | || |||||||| | || || |||| | |||||||||| | Sbjct 666 CACTTCTTCATGTTATTAGTTCCTGTTACAGGTCTATGGATGTCTGCTATTGGTATTGTA 607 Query 168119 GGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAG 168178 ||| | ||| | || | |||||||||||||| || ||||| || || | || || || Sbjct 606 GGTTTAGCAGTAAACTTACGTGCTTATGACTTCGTTTCTCAAGAGATTCGTGCTGCTGAA 547 Query 168179 GATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCC 168238 || || || |||||||||||||| ||||||||| | | | |||||||| | ||||| Sbjct 546 GACCCTGAATTTGAAACTTTCTACACGAAAAACCTTTTATTAAATGAAGGTATTCGTGCT 487 Query 168239 TGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCA 168298 ||||||||| |||||||||||||||| ||||| ||||| ||||||||||| || Sbjct 486 TGGATGGCTGTTCAAGACCAACCACATGAAGGTTTTGTTTTCCCTGAAGAAGTATTACCT 427 Query 168299 AGAGGCAACGCTCT 168312 | || |||||||| Sbjct 426 CGTGGTAACGCTCT 413 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 167813 CAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTA 167872 || ||||| ||||||||||| | ||||| ||||| |||||||| ||||||||| | || Sbjct 2130 CAAGGTTTTCATAACTGGACTTTAAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTA 2071 Query 167873 GGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGAT 167932 || | ||| || | | ||| || || |||| ||| ||||| || || | | ||||||| Sbjct 2070 GGTGCTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTTGAAGAT 2011 Query 167933 GGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCC 167992 ||||| || ||||||||| ||||| | | || |||| || ||||| ||||| Sbjct 2010 GGTGATGGTGCTAACACTTTCCGTGCATTCAACCCTACACAGGCTGAAGAAACATATTCT 1951 Query 167993 ATGGT 167997 ||||| Sbjct 1950 ATGGT 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567160110434400