Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq235 111 3e-19 seq643 109 1e-18 seq6203 107 4e-18 seq5827 107 4e-18 seq2824 107 4e-18 seq1277 107 4e-18 seq1138 98.7 2e-15 seq2348 96.9 7e-15 seq3145 93.3 9e-14 >seq235 Length=65441 Score = 111 bits (122), Expect = 3e-19 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCT 280763 ||||| | ||| |||||||| || || |||||||||||||| | || | | || || Sbjct 28955 CACTCGCACATCCGCGGTCTGTCGGGCGGCCAGAAGGTCAAGGTCGTGCTGGCTGCCGCC 29014 Query 280764 CTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAG 280823 |||||| |||| ||| ||||||| || |||||||| |||||||| ||||||||||| Sbjct 29015 ACGTGGCAGAACCCCCACCTGATCGTGCTGGACGAGCCCACCAACTACCTGGACCGCGAC 29074 Query 280824 AGCCTGGGCGCTCTGAGTGCTGC--TC-TGGACACATTTGGCGGCGGCGTCGTAGTCATT 280880 || ||||| ||| | ||| || |||| || ||||||||| |||| |||| Sbjct 29075 TCGCTCGGCGCCCTGGCCGGTGCCATCAAGGAC---TTCGGCGGCGGCATCGTCATCATC 29131 Query 280881 TCTCACAGCACAGAATTTGTCAAGTCTGTGTGCTCCGAGATGTGGACAGTGGG 280933 || ||| || || || || | || ||||| ||| ||||| ||||| Sbjct 29132 TCCCACCACAACGAGTTCGTGTCGGCTCTGTGCAATGAGCGGTGGATCGTGGG 29184 Score = 105 bits (116), Expect = 1e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| ||||| ||||||||||||||||| || | ||| ||| || || Sbjct 27401 GTGGGCTCCCTGTCCGGTGGCTGGAAGATGAAGCTGGCGCTGGCCCGCTGCATGCTCATG 27460 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 |||| |||| ||||| || ||||| |||||||| | ||| |||||| Sbjct 27461 AAGCCCGACATCCTGCTGCTGGACGAGCCCACCAACCATCTCGACGTGGGCAACGTCAAG 27520 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||||| | | ||||||| |||| || | | || || || |||| || || |||||| Sbjct 27521 TGGCTGGAGACCTACCTGACCACGCTCACGTCGGTGTCGGCCATCATCGTGTCGCACGAC 27580 Query 279876 TCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTA 279916 || |||||||| || ||||||| | |||||| |||| Sbjct 27581 TCCGGCTTCCTGGACCACGTGTGCACGCACATCATCGACTA 27621 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || || || ||||| |||| || |||||||| || || |||| ||||||||||| ||| Sbjct 26583 GGCGATGAGCTGTGCAACTGCGAGTTCTCGCTGGCCTACGGTGCCAAGATTCTGCTCAAC 26642 Query 279405 TCTAC-CCGC-CTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 || |||| || | | ||||||||| ||| || || || ||| ||||| || | Sbjct 26643 A--ACGCCGCGCTGCGCCTGAAGCGTGGCCGCCGCTACGGCCTGTGCGGCCCCAACGGTG 26700 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 ||| ||| ||| || |||||||||||||| ||||| ||| |||| || || || Sbjct 26701 TGGGCAAGTCCACGCTGATGCGCGCCATTGCCAACGGCCAGGTGGACGGCTTCCC 26755 >seq643 Length=40979 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 9419 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 9478 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 9479 CCCCTCATTGGGC 9491 >seq6203 Length=3415 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 315 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 256 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 255 CCCTCATTGGGC 244 >seq5827 Length=3898 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 1565 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 1506 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 1505 CCCTCATTGGGC 1494 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 3304 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGG 3245 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 3244 CCCTCATTGGGC 3233 >seq2824 Length=12096 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 11040 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 11099 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 11100 CCCTCATTGGGC 11111 >seq1277 Length=25674 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 16626 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 16685 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 16686 CCCTCATTGGGC 16697 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| Sbjct 24809 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 24868 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 24869 CCCTCATTGGGC 24880 >seq1138 Length=28041 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||| Sbjct 27899 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGTCTCTTAATCTTATGGTCGAGGGTTCGAGC 27958 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 27959 CCCTCATTGGGC 27970 >seq2348 Length=14989 Score = 96.9 bits (106), Expect = 7e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 280712 CATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCA 280771 ||| ||||| || || || || ||||||||||| || ||| | | ||| || ||||||| Sbjct 13855 CATCCGCGGCCTGTCGGGCGGGCAGAAGGTCAAGCTCGTCCTGGCAGCGGCCATGTGGCA 13796 Query 280772 ACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGG 280831 ||| ||| || |||| || |||||||| |||||||| ||||||||||| ||||| Sbjct 13795 CTGCCCGCACCTGCTCGTCCTGGACGAGCCGACCAACTACCTGGACCGCGACTCGCTGGG 13736 Query 280832 CGCTCT 280837 ||| || Sbjct 13735 CGCGCT 13730 >seq3145 Length=10667 Score = 93.3 bits (102), Expect = 9e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 251583 CTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATG 251642 || ||| ||||| | |||||||||||||||||||| || | ||||| |||||||| Sbjct 864 CTGCAGCGAGATCATGTCCATGAAGTCGAAGGGGTTGGTCACGTTGTAGTGCTTGGGGCA 805 Query 251643 GCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCC-CATCAGTTCAG 251701 ||| || || || | | |||||| ||||||||||| | ||| |||| |||||| | Sbjct 804 GCCCAGCGCCACCAGCAGGCGGTCCGCCACAAACTCAATGTAC-GTCCGCATCAGCCGCG 746 Query 251702 AGTTCATGCCAATCA 251716 ||||||||| |||| Sbjct 745 CGTTCATGCCGATCA 731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027703277896899