Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq235 129 1e-24 seq2348 118 2e-21 seq3145 113 8e-20 seq5827 105 1e-17 seq6203 104 4e-17 seq2824 104 4e-17 seq1277 104 4e-17 seq643 104 4e-17 seq2491 102 2e-16 seq1138 100 5e-16 seq601 98.7 2e-15 seq330 95.1 2e-14 seq143 89.7 9e-13 seq2609 87.8 3e-12 >seq235 Length=65441 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225433 CGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGT 225492 || |||||| ||| |||||||| |||||||| ||||| ||||||| |||||| ||| Sbjct 27607 CGTGCACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACGATGATGGCCGACACCGACGT 27548 Query 225493 CAGGCCCTTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGG 225552 || | |||| || ||||| ||||||| ||||| | ||||| || || Sbjct 27547 GAGCGTGGTCAGGTAGGTCTCCAGCCACTTGACGTTGCCCACGTCGAGATGGTTGGTGGG 27488 Query 225553 TTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCAT 225612 |||||||| ||||||||||| | | ||||| ||| ||| | || | ||||||||| Sbjct 27487 CTCGTCCAGCAGCAGGATGTCGGGCTTCATGAGCATGCAGCGGGCCAGCGCCAGCTTCAT 27428 Query 225613 TTTCCAGCCCCCGGACAGGGAGCC 225636 |||||||| |||||||||||||| Sbjct 27427 CTTCCAGCCACCGGACAGGGAGCC 27404 Score = 127 bits (140), Expect = 4e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 225009 TGTCCAGGTGGTTCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGT 225068 |||| ||||| ||||| | |||||||| || |||||||| ||||| || ||||||| || Sbjct 28189 TGTCAAGGTGCTTCTCCAGGTGGTGGAAGGCGTGCTGGGCGACGTAGGCGATGCGCAGGT 28130 Query 225069 TGGGATGCTTCCACACAGAGCCCCGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGA 225128 |||| ||||||||||| | || || || | | ||||||||| || |||||||||| Sbjct 28129 TGGGGTGCTTCCACACGGTACCAGAGGTGGGCTCCGTCTCGCCGGTCAGCACCTTGATGA 28070 Query 225129 GCGTAGTCTTGCCCGCACCATTGGGGCC 225156 | || | |||||| ||||| |||||||| Sbjct 28069 GGGTCGACTTGCCGGCACCGTTGGGGCC 28042 Score = 114 bits (126), Expect = 2e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 224434 CACGAATTCAGTGCTGTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGA 224493 |||||| || || ||| || || | || | ||||||||||| || | ||| Sbjct 29152 CACGAACTCGTTGTGGTGGGAGATGATGACGATGCCGCCGCCGAAGTCCTTGATGGCACC 29093 Query 224494 TGAAAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAAC 224553 | || ||||| ||||| |||||||| ||| |||| || ||||| ||||| | ||| | Sbjct 29092 GGCCAGGGCGCCGAGCGAGTCGCGGTCCAGGTAGTTGGTGGGCTCGTCCAGCACGATCAG 29033 Query 224554 GTGGGGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAG 224613 ||||||| ||||||| ||| ||| | | ||| | ||| |||||||| ||||| || || Sbjct 29032 GTGGGGGTTCTGCCACGTGGCGGCAGCCAGCACGACCTTGACCTTCTGGCCGCCCGACAG 28973 Query 224614 GCCGCGGATCCGCGAGTG 224631 |||||||| ||||||| Sbjct 28972 ACCGCGGATGTGCGAGTG 28955 Score = 107 bits (118), Expect = 4e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 |||||||| |||| |||||| || ||||| || || | ||| || ||||||| | ||| Sbjct 26755 GGGAAGCCGTCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGCCCACACCG 26696 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGA-GTTCAG 225936 ||||| ||| |||||||| | || ||||| | | || |||| | ||| || Sbjct 26695 TTGGGGCCGCACAGGCCGTAGCGGCGGCCACGCTTCAGGCGCAG-CGCGGCGTTGTTGAG 26637 Query 225937 GAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 || |||||| |||| ||||| || ||||||||||| | |||||| || || |||||||| Sbjct 26636 CAGAATCTTGGCACCGTAGGCCAGCGAGAACTCGCAGTTGCACAGCTCATCGCCCTCCTC 26577 Query 225997 G 225997 | Sbjct 26576 G 26576 >seq2348 Length=14989 Score = 118 bits (130), Expect = 2e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 224498 AGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGG 224557 |||||||| ||||| |||||||| ||| |||| |||||||| ||||||| || | ||| Sbjct 13730 AGCGCGCCCAGCGAGTCGCGGTCCAGGTAGTTGGTCGGCTCGTCCAGGACGAGCAGGTGC 13789 Query 224558 GGGCACTGCCACAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCG 224617 ||||| ||||||| ||| || | | || ||||| |||||||| ||||| || |||||| Sbjct 13790 GGGCAGTGCCACATGGCCGCTGCCAGGACGAGCTTGACCTTCTGCCCGCCCGACAGGCCG 13849 Query 224618 CGGAT 224622 ||||| Sbjct 13850 CGGAT 13854 Score = 100 bits (110), Expect = 5e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 224961 GGTCCTGGCCTGAGGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGT 225020 |||||| ||| | | ||||||| | |||||||||||||||| |||||||||||||||| Sbjct 14759 GGTCCTCGCCCTTGCCGTACCGCCTCCGGATGTACTGGTTGGGCGTCATGTCCAGGTGGT 14818 Query 225021 TCTCAATATGGTGGAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCC 225080 ||| | ||||| | || ||||| | ||||| |||| ||||| |||| |||||| Sbjct 14819 CCTCCAGGTGGTGCAGCGCGTGCTGCGACACGTAGGCCACGCGCACGTTGACGTGCTTCT 14878 Query 225081 ACACAGAGCC 225090 ||| | ||| Sbjct 14879 GCACGGTGCC 14888 >seq3145 Length=10667 Score = 113 bits (124), Expect = 8e-20 Identities = 122/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| |||||||||||||| ||||| ||||||||| || || ||||||||||| || Sbjct 268 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 209 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACG 10370 || || |||||||| |||| ||||||||| || ||||| ||||| |||||||| Sbjct 208 GCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAA--GAAGATGCCCTCCACC 151 Query 10371 CACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGTCGC 10410 | |||| || || ||||| | |||||||||||||| Sbjct 150 GCCGAGAAGGCCACCAGACGCTCGGAGAAGGAGCGGTCGC 111 >seq5827 Length=3898 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||||||| Sbjct 1566 CGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1507 Query 84515 CCCCACATCGGGC 84527 |||| ||| |||| Sbjct 1506 CCCCTCATTGGGC 1494 Score = 100 bits (110), Expect = 5e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||||||| Sbjct 3305 CGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 3246 Query 84515 CCCCACATCGGGC 84527 ||| ||| |||| Sbjct 3245 GCCCTCATTGGGC 3233 >seq6203 Length=3415 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||| Sbjct 315 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 256 Query 84516 CCCACATCGGGC 84527 ||| ||| |||| Sbjct 255 CCCTCATTGGGC 244 >seq2824 Length=12096 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||| Sbjct 11040 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 11099 Query 84516 CCCACATCGGGC 84527 ||| ||| |||| Sbjct 11100 CCCTCATTGGGC 11111 >seq1277 Length=25674 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||| Sbjct 16626 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 16685 Query 84516 CCCACATCGGGC 84527 ||| ||| |||| Sbjct 16686 CCCTCATTGGGC 16697 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||| Sbjct 24809 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 24868 Query 84516 CCCACATCGGGC 84527 ||| ||| |||| Sbjct 24869 CCCTCATTGGGC 24880 >seq643 Length=40979 Score = 104 bits (114), Expect = 4e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| |||||||||| ||||||| |||||||||| |||||||||| Sbjct 9420 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGC 9479 Query 84516 CCCACATCGGGC 84527 ||| ||| |||| Sbjct 9480 CCCTCATTGGGC 9491 >seq2491 Length=14023 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| || ||||| | ||||||| ||| |||||||| | || || || ||| Sbjct 13383 CCCTCCTTGTCCTGGATCTTAGACTTGACGTTCTCAATGGTGTCCGAAGACTCCACCTCC 13324 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||||||||||||||| |||||||| Sbjct 13323 AGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAAATCTGCAT 13280 >seq1138 Length=28041 Score = 100 bits (110), Expect = 5e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||||||||||||||||| |||||||||| ||||||| ||| |||||| ||||||||| Sbjct 27898 CGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGTCTCTTAATCTTATGGTCGAGGGTTCGAG 27957 Query 84515 CCCCACATCGGGC 84527 |||| ||| |||| Sbjct 27958 CCCCTCATTGGGC 27970 >seq601 Length=42509 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| | ||||||| |||||| ||||| | || || || || Sbjct 41726 CCCTCCTTGTCCTGAATCTTGGACTTGACGTTCTCGATAGTGTCCGAGGACTCCACCTCA 41667 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||||||||| || || |||||||| Sbjct 41666 AGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 41623 >seq330 Length=56297 Score = 95.1 bits (104), Expect = 2e-14 Identities = 167/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 176172 TCCTCG---AGGTAGTTCAGCAG-ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTT 176227 |||||| |||||||| ||||| ||| |||||| || || ||| | | ||| ||| Sbjct 35686 TCCTCGTTCAGGTAGTTGAGCAGCACG-TCGTCGTTCTCGTTGAACAGCTGCCGCGTGAG 35744 Query 176228 GGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCG 176287 | | ||| | ||| |||| || | || || || ||||||||| || || || || Sbjct 35745 CGCGCCCAGGCGCGTGTAGATGTAACGCGCCGAGGCGGCGTCCTTGCCGCCCTGCAGCCG 35804 Query 176288 GGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTG 176347 | ||||| || |||| || | |||| |||| ||| || || |||||| |||| || Sbjct 35805 CGTGCCGAACTGACCGCTGGGGTGCAGCAGGTTGACGTTGTTGGAGCCCACGAAGTCCTG 35864 Query 176348 GGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTC 176407 |||| ||| ||||| ||| || |||| |||||||||||| ||| | | || ||| Sbjct 35865 CGCCAGGTTGACGATGGCTCCCGCCAGCGACGTCTCGCCGTGGTGGTAGGCCGAGTGCTC 35924 >seq143 Length=80130 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 || |||||||| |||||||| | ||| || |||||||||||| | || || || || Sbjct 56635 CCCTCCTTGTCCTGAATCTTGGACTTCACATTCTCGATGGTGTCCGAAGACTCCACCTCG 56576 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||| || || |||||||||||||| ||||| || ||||| Sbjct 56575 AGGGTGATAGTCTTACCCGTGAGGGTCTTAACGAAGATTTGCAT 56532 >seq2609 Length=13299 Score = 87.8 bits (96), Expect = 3e-12 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 || |||||||| |||||||| | || ||| |||||||||||| ||| || || || || Sbjct 1605 CCCTCCTTGTCCTGAATCTTGGATTTTACGTTCTCGATGGTGTC-GCTAGACTCCACCTC 1547 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTA 68468 ||| ||||| || || || || || ||||| ||||| |||||||| ||||| Sbjct 1546 CAACGTGATCGTCTTCCCTGTAAGCGTCTTCACGAAAATCTGCATCGTGCTA 1495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921505595881080