Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3145 138 2e-27 seq1311 131 3e-25 >seq3145 Length=10667 Score = 138 bits (152), Expect = 2e-27 Identities = 130/163 (80%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 42698 CGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTC 42757 |||| | ||||| ||||| | || || ||||||||||||||||||||| | ||| ||| Sbjct 127 CGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTC 186 Query 42758 CATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCA 42816 |||||||||||||||| || || || |||||||| ||||||||||| ||||| |||| Sbjct 187 CATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCA 245 Query 42817 TCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCT 42859 || | |||||||| ||||| | ||||| |||||||| || Sbjct 246 TCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCTGCT 288 >seq1311 Length=25178 Score = 131 bits (144), Expect = 3e-25 Identities = 102/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 244720 GGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTG 244779 |||||||| || ||||||||||| ||||| |||||||||||||||||||| ||| || Sbjct 7394 GGTGTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTG 7335 Query 244780 ATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 ||||||||| |||||||||||||||||| |||||| | || |||||||||| ||| Sbjct 7334 GTTGGACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACCTG 7275 Query 244840 GG 244841 || Sbjct 7274 GG 7273 Score = 111 bits (122), Expect = 3e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || |||||| |||||||||||||| ||| | | ||| ||||| | || | | ||| || Sbjct 6350 CTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCGCGGGCACGCGCCTCCTC 6291 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 | ||| |||||| | ||| |||| |||||||| ||||| |||||||||||||||| Sbjct 6290 CTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCCGCGTGCCAGGGCTCCAT 6231 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 ||||| |||| ||||| |||||| ||| ||||| Sbjct 6230 GTAGATGGCGAACGCGCCCTTGCGCTTGCCGCCGCCCTG 6192 Score = 89.7 bits (98), Expect = 1e-12 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 245187 CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 ||||||||| |||||| | ||||| |||||||| ||| |||||||||||| ||||| Sbjct 5938 CGTTGAAGACGCGCAGCATGGGCACGATGCCGTTCGAGGTGCCGTTGGTGCCGCGGATGT 5879 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 | | || || | | || |||| ||| |||| ||| | ||||| || |||||||| Sbjct 5878 ACGACCCAGTGGCGCGGATGTTGTGGATCGACAGGCCGATGCCGCCTGCCGACTTGGAGA 5819 Query 245307 TGAGGGCGCAGCTCTTGATGGTG 245329 | | |||||| ||| || ||||| Sbjct 5818 TCACGGCGCA-CTCCTG-TGGTG 5798 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGG 244553 |||||||||| | ||||||||| | ||| ||| |||||||||| || | ||| | Sbjct 8057 CCTGCACGCCCAGGCCGATGGGGCGGTGGCGCATGTTGGAGCGTTGCGCCTTGGGGTGCG 7998 Query 244554 GGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCAT 244599 |||| ||||| ||||||| | |||||| ||||||||||| | ||| Sbjct 7997 GGTAGTAGTTGACGTCGATGATCTTGTTCAGGTTGCGGGTCACCAT 7952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944219516810640