Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq235 100 6e-16 seq2937 86.0 1e-11 >seq235 Length=65441 Score = 100 bits (110), Expect = 6e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 334182 GGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCG 334241 ||||| || || | ||| ||||| |||| ||||||||||| || || || ||| | ||| Sbjct 26755 GGGAAGCCGTCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGCCCACACCG 26696 Query 334242 TTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGC-GTATTGTTCAG 334300 || || || ||||| ||||||||| ||||||||||| | | ||| | ||||| || Sbjct 26695 TTGGGGCCGCACAGGCCGTAGCGGCGGCCACGCTTCAG-GCGCAGCGCGGCGTTGTTGAG 26637 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 ||||| || |||| || ||||| || || || || | ||||| || || || Sbjct 26636 CAGAATCTTGGCACCGTAGGCCAGCGAGAACTCGCAGTTGCACAGCTCATCGCC 26583 Score = 93.3 bits (102), Expect = 9e-14 Identities = 181/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 333729 ACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATA 333788 ||||||| |||||| || ||||||||| |||||| |||| ||| | ||| Sbjct 27669 ACGAACTTGGACAGGTTACCCTTGTACACGCGCAGCTTGCGGTTGCA---GTAGTCGATG 27613 Query 333789 ATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACG 333848 || ||||| || ||| ||||| ||||||||||| ||||| || | | ||| || Sbjct 27612 ATGTGCGTGCACACGTGGTCCAGGAAGCCGGAGTCGTGCGACACGATGATGGCCGACACC 27553 Query 333849 TCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTG 333908 | | || || ||||||| ||||||| | ||||| ||| ||||||||| Sbjct 27552 GACGTGAGCGTGGTCAGGTAGGTCTCCAGCCACTTGACGTTGCCCACGTCGAGATGGTTG 27493 Query 333909 GTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCA-CGTGCAAGAGCGAG 333967 || |||||||| || || || | | | |||| ||||| |||| || || || || || Sbjct 27492 GTGGGCTCGTCCAGCAGCAGGATGTCGGGCTTCATGAGCA-TGCAGCGGGCCAGCGCCAG 27434 Query 333968 TTTCATTTTCCACCCTCCTGAAAG 333991 ||||| ||||| || || || || Sbjct 27433 CTTCATCTTCCAGCCACCGGACAG 27410 >seq2937 Length=11610 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 333719 ACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTC 333778 |||| ||| |||||||||||||| || || | ||| | ||| ||||| | | | || Sbjct 661 ACGCACCTTGACGAACTCGGACAGGTTGCCGTGGTAGTACTTGAGCTTGCGCT---GCTC 717 Query 333779 GTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCAC 333838 ||| ||||| || |||||| || ||||| ||||| || |||||||| ||||| |||| Sbjct 718 GTAGTGGATGATGTCGGTGCACACGGCGTCCAGGAAGCCAGAGTCGTGCGACACGATCAG 777 Query 333839 GCACGAAACGT 333849 ||| | |||| Sbjct 778 GCAGGTCACGT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102736729339650