Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq601 93.3 4e-14 seq8888 87.8 2e-12 seq2609 84.2 2e-11 >seq601 Length=42509 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| ||||| | ||||| || || || |||||||| || || Sbjct 42432 CCACCGCGCAGGCGCAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 42373 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 42372 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 42313 Query 64337 ATTCCT 64342 || ||| Sbjct 42312 ATGCCT 42307 >seq8888 Length=1414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||||| || || || |||||||| || || Sbjct 1104 CCACCGCGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 1163 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || ||||||||||| || || Sbjct 1164 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 1223 Query 64337 ATTCCT 64342 || ||| Sbjct 1224 ATGCCT 1229 >seq2609 Length=13299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || || || |||||||| || || | |||||| | || Sbjct 1854 AGCACGAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGCTAGCGTGCGCCCATCC 1795 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||||||||||||||||| | || || |||||||||||||| ||||| ||| Sbjct 1794 TCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGGGGAATGCCT 1744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499581476267160