Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1311 114 1e-20 >seq1311 Length=25178 Score = 114 bits (126), Expect = 1e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 94046 TCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCC 94105 ||||| || | || |||| || || ||||||||||| ||||| |||||||| |||||| Sbjct 5852 TCCACAACATCCGCGCCACTGGGTCGTACATCCGCGGCACCAACGGCACCTCGAACGGCA 5911 Query 94106 TCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGG 94156 |||| || ||||| || ||||||||| || |||| |||||||||||||||| Sbjct 5912 TCGTGCCCATGCTGCGCGTCTTCAACGACACGGCCCGCTACGTGGACCAGG 5962 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| || || | | | ||||| | ||||| |||| | |||||||||||||||||| Sbjct 6192 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACATGGAGCCCTGGCACGCGGAC 6251 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 ||| | ||| | |||||||| |||||||||||||| || || | | ||| | ||| Sbjct 6252 GTGTTTGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCCCGCGAC 6311 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||||| || ||| | || ||||| || ||| Sbjct 6312 CTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATG 6347 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 ||||| ||||| |||| || ||||| ||| ||||||| | |||| |||||||||| Sbjct 7275 CAGGTCGAGACCGGTAACCCGTACATGCTGTACAAGGACGCCTGCAACAGCAAGTCCAAC 7334 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 |||||| |||| || |||||| |||| || |||||||||||||| || ||||| || Sbjct 7335 CAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACCGAGATCGTAGAGTACAC 7393 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| ||| ||| ||||||| ||||| ||||||||||| ||||| || |||||||| Sbjct 8913 CACGGCGTGCGCAACTCGCTGCTGGTGGCGCCCATGCCCACCGCCTCGACCTCGCAGATC 8972 Query 95137 CTTGGCAACAACGAG 95151 || |||||||||||| Sbjct 8973 CTGGGCAACAACGAG 8987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494660500018440