Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3145 100 3e-16 seq1311 89.7 5e-13 >seq3145 Length=10667 Score = 100 bits (110), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 52633 AGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGT 52692 ||||||| | |||| |||| ||||||| || ||| | ||||||||||||| | ||| Sbjct 698 AGGAGTTCTGCACGGACGCGTTGCCGGTGGACCTGATCGGCATGAACGCGCGGCTGATGC 757 Query 52693 GCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAG-CCAAAGTAC 52751 | |||||| |||||||||||||| || ||| ||||| ||| |||| | || ||| || Sbjct 758 GGACGTACATTGAGTTTGTGGCGGACCGCCTGCTGGTGGCGCT-GGGCTGCCCCAAGCAC 816 Query 52752 TTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 | ||||| ||| || || || || ||| ||| || ||||| Sbjct 817 TACAACGTGACCAACCCCTTCGACTTCATGGACATGATCTCGCT 860 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 52393 CCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCG 52452 ||||||| ||||||||||| | || |||||| | || || || ||| || | Sbjct 126 CCGAGCGTCTGGTGGCCTTCTCGGCGGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT 185 Query 52453 CCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGA 52512 ||||||| | | || | | ||| | ||||||||||| || ||| ||||||| | | Sbjct 186 CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCA 245 Query 52513 TATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 | ||||||||||| || |||||||| ||||| || ||||| Sbjct 246 TCTCGCGCGACGAGGGCCTGCACACCGACTTCGCCTGCCT 285 >seq1311 Length=25178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 153636 TCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGC 153695 ||| |||||| |||||||||| ||| |||||| ||| || ||| ||||| || ||| Sbjct 7396 TCGGTGTACTCTACGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGC 7337 Query 153696 TGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACT 153755 || ||| |||| ||||| ||||| ||| | ||||||||||| ||||||||||| Sbjct 7336 TGGTTGGACTTGCTGTTGCAGGCGTCCTTGTACAGCATGTACGGGTTACCGGTCTCGACC 7277 Query 153756 TG 153757 || Sbjct 7276 TG 7275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496199504944080