Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20debaryana_20[genbank_20GCA_5F001662405.1_202016-04- 26] 10,139 sequences; 120,364,444 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq5054 513 2e-140 seq4579 246 4e-60 >seq5054 Length=5139 Score = 513 bits (568), Expect = 2e-140 Identities = 537/700 (77%), Gaps = 4/700 (1%) Strand=Plus/Minus Query 7814 TGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGG 7873 |||||||| || |||||||| |||||||||||||||||||| ||||| ||| Sbjct 1542 TGAGCAGCTACAATGTTGTAAGTCTCTTCTTCTTGACCGAAACGGTAACCTGCGTTTGTA 1483 Query 7874 GACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCA 7933 || || ||||| |||||||| | | ||| || || || | ||||| ||||| ||| Sbjct 1482 GATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAAGTAACTAATGAACCGTGCATAGCA 1423 Query 7934 CTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGG 7993 ||| | ||||||||||| |||||||| || || | ||||||||| |||||||| ||| Sbjct 1422 GAGAATAATGAACCACCAAATACACCAGCAACACCTAACATGTGGAACGGGTGCATAAGG 1363 Query 7994 ATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGC 8053 ||||||||||| |||||||| || | |||| |||| || ||||| || || || | ||| Sbjct 1362 ATGTTGTGCTCAGCTTGGAATACGATCATGAAGTTAAATGTACCTGAAATACCTAATGGC 1303 Query 8054 ATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCA 8113 ||| |||| ||||| |||||||| |||| || || || | ||||||||| || || ||| Sbjct 1302 ATACCGTCTGAGAATGAACCTTGGCCGATTGGGTAAACTAAGAATACAGCTGAAGCAGCA 1243 Query 8114 GCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGT 8173 || |||||||| ||||| || ||| |||||| ||||||||||||| |||| | || | | Sbjct 1242 GCTACTGGAGCTGAGTAAGCAACAGCGATCCATGGACGCATACCTAAACGGAACGATAAT 1183 Query 8174 TCCCACTCACGACCCATGTATGCAT-AGATACCGATCAGGAAGTGGAAGATAACGAGTTG 8232 ||||| |||||||||||||| ||| | | ||| | ||||||||| | | | ||||| Sbjct 1182 TCCCATTCACGACCCATGTA-GCAGCATACACCTAAAAGGAAGTGGCAAACGATTAGTTG 1124 Query 8233 GAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAA 8292 | ||||||||||||| || | ||| || || | |||||| |||||||| || || ||||| Sbjct 1123 GTAAGGACCACCGTTATATAACCATTCGTCTAAAGAAGCAGCTTCCCAAATTGGGTAGAA 1064 Query 8293 GTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATA 8352 ||| ||||| ||||||||||||| || ||||||||||| || || |||||||| || || Sbjct 1063 GTGAAGACCGATAGCGTTAGAAGTTGGTACAACAGCACCTGAAATAATGTTGTTACCGTA 1004 Query 8353 CATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGAC 8412 | || ||||| | || ||||||||||| || || ||||| || || |||||||||| Sbjct 1003 AAGAAGAGAACCTGAAACTGGTTCACGGATACCATCGATGTCTACTGGCGGAGCAGCGAT 944 Query 8413 GAAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGA 8471 |||||||| |||||| || || | |||| || || |||||||| | ||||||| Sbjct 943 GAAAGCGATGATGAATACTGAT-GTTGCAGTAAGAAGACATGGAATCATGATTACACCGA 885 Query 8472 ACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCA 8511 ||||||||| || | ||| || | || || || | ||| Sbjct 884 ACCAACCGATGTATAAACGGTTTTCAGTTGAAGTAATCCA 845 Score = 141 bits (156), Expect = 1e-28 Identities = 120/145 (83%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 7669 GAAACCGTTGAGGTTGAATGCCATGGT-GCTAACACCAAGAGCAGTGAACCAGATGCCAA 7727 ||||||||| | |||||||||||| || | ||| ||| | |||||||||||| || || | Sbjct 3772 GAAACCGTTTAAGTTGAATGCCATAGTTGATAA-ACCTAAAGCAGTGAACCAAATACCGA 3714 Query 7728 CAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATT 7787 || ||||| || || | ||||||||| | ||||| ||||||||||| |||||||||| Sbjct 3713 TTACCGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAATGAAGCGTATT 3654 Query 7788 GGAAGATCAGACGACCAAAGTATCC 7812 ||||||| |||||||||||||| || Sbjct 3653 GGAAGATTAGACGACCAAAGTAACC 3629 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 7531 AGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCC 7590 || || ||| | ||| | |||||||||||||| |||||||||||||| |||||||| || Sbjct 5089 AGAAGAAGCTAAGTCTAACGGGAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACC 5030 Query 7591 AAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAAT 7650 | ||||||||||| | ||| ||||| ||||| | ||||||||||| || | Sbjct 5029 TAAGTTAGCACGGTTGATGATGTCCGCCCAAGTGTTTAATACACGACCTTGTGAGTCTAC 4970 Query 7651 GATGGACTGGTTGAAGTTGA 7670 | || ||||||||||||| Sbjct 4969 TACTGATTGGTTGAAGTTGA 4950 >seq4579 Length=6132 Score = 246 bits (272), Expect = 4e-60 Identities = 359/505 (71%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 6775 GAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAG 6834 ||| ||||| || |||||||||||||| || ||||||||||||| || || || | Sbjct 3611 GAAACGGAAGATTGCTGCAACACCAAAGCTTGGAGCAAAGAACCAACCTGATTGACCTAA 3670 Query 6835 AGGATACATGAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATT 6894 ||||| || || || ||||| || |||||||| ||| | || || || || || || Sbjct 3671 TGGATAAATTAGGAAAACAGAAGTGAAAACAGCAATTGGAGCTGAGAAAGCAATAGCGTT 3730 Query 6895 GTAGGGACGAATACCGACTAGACGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAG 6954 || ||||| | ||| ||| || || |||||||| |||||||||||||| || | Sbjct 3731 ATATGGACGTAGGTTTACTGAACGAGCAATTTCAAACTGACGAAGCATGAAACCAATTAA 3790 Query 6955 GGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGAC 7014 |||| || ||||| | || | ||| | ||||| || ||||| || ||| || Sbjct 3791 ACCAAATGCACCGTGTAATGCAATAAATGCCCATAAACCACCAAGCTGACACCAACGTGT 3850 Query 7015 GAAATCTCCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGC 7074 |||||| || |||||||| |||||||| | || || || || || | | | || || Sbjct 3851 GAAATCACCTTGAGCTTCAGGACCCCAAACAAATAGAAGAGAGTGAGCTAAACTGTTAGG 3910 Query 7075 AGGAGTTGATACAGCAGCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCC 7134 || ||||| || || ||||| | ||| ||||| || || | || |||| ||| | || Sbjct 3911 TGGTGTTGAAACCGCTGCAGTTAAGAAGTTACAACCTTCTAAGTAAGAAGTAGCTAAACC 3970 Query 7135 GTGAGTGTACCAGCTCGTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTA 7194 ||||| ||||| || || |||||||| || || | ||| || || ||||| | || Sbjct 3971 ATGAGTATACCATGATGTAACAAAAGTTGTACCAGTAAACCAGCCACCTAGTGCAAAATA 4030 Query 7195 AGCAGTAGGGAACAGAAGAAGACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAG 7254 |||| |||||| || | | |||||||||||| || || ||||| | || | ||| Sbjct 4031 AGCACAAGGGAAAAGTAATAAACCTGACCAACCTACGAATACGAAACGGTCTTGACGAAG 4090 Query 7255 CCAGTCATCGAGTA-CATCAAACCA 7278 ||||||||| || | |||||||||| Sbjct 4091 CCAGTCATC-AGCATCATCAAACCA 4114 Score = 210 bits (232), Expect = 3e-49 Identities = 235/314 (75%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || |||||||||||||| || ||||| |||||||||||| || Sbjct 413 AGAGCGTTACCACGAGGTAATACTTCTTCAGGGAAAACAAAACCTTCATGTGGTTGGTCT 472 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 |||||||| ||||| | ||||||||| |||| | ||| || || ||||| || Sbjct 473 TGAACAGCCATCCAAGCACGAATACCTTCATTTAATAAAAGGTTTTTCGTGTAGAAAGTT 532 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || || || || || || | |||||||| ||||| ||||||||||| | | | Sbjct 533 TCAAATTCAGGGTCTTCAGCAGCACGAATCTCTTGAGAAACGAAGTCATAAGCACGTAAG 592 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || | ||| | ||| | ||||||||| ||| |||| ||||| |||||||||| || Sbjct 593 TTTACTGCTAAACCTACAATACCAATAGCAGACATCCATAGACCTGTAACAGGAACTAAT 652 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | ||| ||||| || |||||||| || || ||| || | ||||||||| || |||||| Sbjct 653 AACATGAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTGACCAG 712 Query 6563 AAACGATTAGCCGT 6576 ||||| || || || Sbjct 713 AAACGGTTTGCAGT 726 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 6578 ACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGT 6637 ||||| ||||| || || || | |||||||| | || || |||||| || | Sbjct 1946 ACCATAGAATATGTTTCTTCAGCCTGTGTAGGGTTGAATGCACGGAAAGTGTTAGCACCA 2005 Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| || || || |||||||||||||||||||||||||| | || || Sbjct 2006 TCACCATCTTCAAATAATGTGTTTTCTACAGTAGCACCGTGAATAGCACATAATAAAGCA 2065 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 ||||||| | ||| || ||||||||||| || || ||||| | |||||||| || || Sbjct 2066 GCACCTAAAACACCAGCAACACCCATCATGTGGAATGGGTTTAAAGTCCAGTTATGAAAA 2125 Query 6758 CCCTG 6762 || || Sbjct 2126 CCTTG 2130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622045953458160